Glyma.19g222000

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Report for Sequence Feature Glyma.19g222000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47396909
stop:	47399851
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g222000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09530.1	AT	phytochrome interacting factor 3	JGI	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	JGI	N/A	IEA
KOG4304	KOG	Transcriptional repressors of the hairy/E(spl) family (contains HLH)	JGI	N/A	IEA
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI	N/A	IEA
PTHR12565:SF7	Panther		JGI	N/A	IEA
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI	N/A	IEA

Proteins Associated with Glyma.19g222000

Locus	Gene Symbol	Protein Name
	PIF3	bHLH transcription factor PIF3

Expression Patterns of Glyma.19g222000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g222000 not represented in the dataset	Glyma.19g222000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g222000

Paralog	Evidence	Comments
Glyma.03g225000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g222000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g40980	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g222000

Limit To All Plant Sequences

>Glyma.19g222000.2 sequence-type=transcript locus=Glyma.19g222000 ID=Glyma.19g222000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAGTACTAGGAATTAAATTGTGAAATGACTTGTATGCCATCCCCAACGAAGACCACATGGACTAGTAGCATTTATTACCAATTCGTCTTAATTCGTAGAACCATACATTAATTCCCTCACCCCCAAGATTTTTCTTTCGTACAAGAAACAACCACCAGACTGCGATCTCCATTATTTGAGTACTACTACTTTGCATAAAGGGTTCAACAATTCGTGCGTGCACAGTGCCAAATCGTGATCACATGAACTTAATCTTAATCTGTTAGCTAGCTTCAAATGCGTTATTGGGTCTCACAAAAAGGAGCTAGCTAGGAAGTGAATACTACTATTATTTACCTGCCACACACACAGAAACAACATAGATCTAGAAGCAAAGGCAAAGAAGGATTTCAAGCTCAATTGTTTAGCTTAATTAATTTCCTTCAAGCAAATGATGATTCAGAAGATGTTTGACTCCACCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTAATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGTACGAGGAGGTTCATCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACTAGGTTAAACCCATTATACTCACTTGAAGATCACTTTCTACCACAAAGGGACTCTGACATGAGCTCTTCACACCAAAGCAATAATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAATGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTataataataataatattaaCATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAGATAAAAATGTATATGAAGGGAAAACTATTCCTGTAACAAAATTAGATTAGAGATGTTAATTAAAGACGAGTGTAAAGTTGGTTTACCCTTTCCATAAAGATGGCATATATTTTCTGATAATAGAATATATCAGCTTTAGAATCTGAC

Coding sequences of Glyma.19g222000

Limit To All Plant Sequences

>Glyma.19g222000.1 sequence-type=CDS polypeptide=Glyma.19g222000.1.p locus=Glyma.19g222000 ID=Glyma.19g222000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGATTCAGAAGATGTTTGACTCCACCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTAATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGTACGAGGAGGTTCATCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACTAGGTTAAACCCATTATACTCACTTGAAGATCACTTTCTACCACAAAGGGACTCTGACATGAGCTCTTCACACCAAAGCAATAATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTACTACTACTACTAATAATTATCAGGGAAACAGTGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTATAATAATAATAATATTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAG

>Glyma.19g222000.2 sequence-type=CDS polypeptide=Glyma.19g222000.2.p locus=Glyma.19g222000 ID=Glyma.19g222000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAATGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTATAATAATAATAATATTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAG

Predicted protein sequences of Glyma.19g222000

Limit To All Plant Sequences

>Glyma.19g222000.1.p sequence-type=predicted peptide transcript=Glyma.19g222000.1 locus=Glyma.19g222000 ID=Glyma.19g222000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMIQKMFDSTRSGMTRSSSHVASINDNDFLELVWENGEIVVRGGSSSNRSRKTNEERIHEDASINKRTRLNPLYSLEDHFLPQRDSDMSSSHQSNNGQDSCQSSQSKNSCKLHEEFANLLKPVTTGNSHLQQCLPSSPLKKQRTDSTQTPRPAKVNFSNFSIPAVFLKSTTTTTTNNYQGNSATQQTKNHSSPARVEEIEALKVDKSAKETQCFQKQTSLTVERSTKLPTPAVDEHSEAAGHNCGVLGIHRSQGQTSTSEALRAKAKAYNNNNINMCHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLMMGFRPPQLPIPPLSAITDNRLIQMFGSPNQIPPMPMPHAPFFPIIGNSATQSHLANNTTTTAAATTNLAEHLANSLHGNATKLAPPSQISFQHHHTSTSTPTLATPFIFPQK*

>Glyma.19g222000.2.p sequence-type=predicted peptide transcript=Glyma.19g222000.2 locus=Glyma.19g222000 ID=Glyma.19g222000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKIRVNPPKARIPASFMKNLQTYLSPLPQAIVTYNSAYLHLRSRNKEPIQPKHQDQQNATQQTKNHSSPARVEEIEALKVDKSAKETQCFQKQTSLTVERSTKLPTPAVDEHSEAAGHNCGVLGIHRSQGQTSTSEALRAKAKAYNNNNINMCHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLMMGFRPPQLPIPPLSAITDNRLIQMFGSPNQIPPMPMPHAPFFPIIGNSATQSHLANNTTTTAAATTNLAEHLANSLHGNATKLAPPSQISFQHHHTSTSTPTLATPFIFPQK*

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