Glyma.19g220000

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g220000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47221481
stop:	47226117
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g220000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62240.1	AT	RING/U-box superfamily protein	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
KOG2231	KOG	Predicted E3 ubiquitin ligase	JGI	N/A	IEA
PTHR22938	Panther	ZINC FINGER PROTEIN 598	JGI	N/A	IEA

Expression Patterns of Glyma.19g220000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g220000

Paralog	Evidence	Comments
Glyma.03g222900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g220000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g40790	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g220000

Limit To All Plant Sequences

>Glyma.19g220000.2 sequence-type=transcript locus=Glyma.19g220000 ID=Glyma.19g220000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACACACATGTTGACATATAAGGTATTTATCTTACCCATCGCAAAGCAACAGTCCAATAATTTAAGATCAGGAAGCCCGATCGTTTCTAATCCTAGAATCCCAATCTCTGTCTCTCTCCCTCTCCTTATTGCAATAACCTAACCTCGTGTCGTGATCCGGGCACTGGAATTAGGGTTTGCGCTTTCTGTGATCCATAATCAAGAATCGAAAGGAGAGAGAGAGAGATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAGTTTTGCTTCACCGTGACTTTGAAAACGTGAAGCATCAAACGCAGTTGAACTTGCTGGCTAAAGCCATGGTTGAACTGCAATATAAACATGAATTTGGTTTTCGGCTTAGGGAGTGGTATTGGATTATATCGGATTTAAGTTAGATTTAAAGTATATCAAGCTGGGATGTGACTTTGACGTTTTGTTGAAGGCCAAACGCCATTGCCTGAATGGGCTTATATTTTATTTTTGGTTTGGGGTATACTTCGATTTTGATCAAAGACAGAGGTGTTCATATGCCAAGTGTACTGTTTGCTTTTTACGAAAGTGGCACTGTTTCTTACTTTGCGATTTGCTGTCTCATCTATCTTCTGCAATTGTATTAGCTTCTGAGGCCAGGCTAGACACTTGTCGACTGGTCTATGTCAGGTTTGTTTGGGTGTCCGGAATGTTAAAAAGAATCAGTAATTAGTAATAATATAAATAAAACAAGGGTATCTTTTATTTATA

Coding sequences of Glyma.19g220000

Limit To All Plant Sequences

>Glyma.19g220000.1 sequence-type=CDS polypeptide=Glyma.19g220000.1.p locus=Glyma.19g220000 ID=Glyma.19g220000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTAATCCTTCACAATCTAAACCGTCAACAAATAATGTTCTTGGACTGTCTCGTAACACTGGGCAGATGAAAACAGTAATTAACAGTGGACCTTCATCATCAACTTATGCAGGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAG

>Glyma.19g220000.2 sequence-type=CDS polypeptide=Glyma.19g220000.2.p locus=Glyma.19g220000 ID=Glyma.19g220000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAG

Predicted protein sequences of Glyma.19g220000

Limit To All Plant Sequences

>Glyma.19g220000.1.p sequence-type=predicted peptide transcript=Glyma.19g220000.1 locus=Glyma.19g220000 ID=Glyma.19g220000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRLCCICKTECNLVFATKALGDYTRMINDFSTLPSEVREGKVGSYWYHEDTNTFFDDMDHYRMIKAMCRLSCSVCDKIEDQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHIISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLTKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAERTFRDQSTSSIGQIAVDDGNDDIDSLIQPFESLAAGGSESSARYLQALGHSSRNGPLEDSSFPPLPITSSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVVNSGNAWPAAGRGLVQTSSNPSQSKPSTNNVLGLSRNTGQMKTVINSGPSSSTYAGSIQATQRTTHGQLPAGSSRNTRDNVRIVHSASAPNLMENNSVEISISDFPPVSAAQVSKLPASSQSKLNVENFQSANKSLVEKIRGALDFDEERYSIFKDISAQYRQGTIDTGTYVDYVQQFGLSHLVLELARLCPDTQKQKELIEAHNASLQRDAFPEINLVRGTASTHHKDGNLNKKGKGKSVDSRGSNSTEKLADSFLSTVHQLQANYKSSEEKVEVLSRGDYRTDRGKLKIKQQIDSNPGSQPTMKLGGQTETSNGSLSDQSKEDGGGGNKQRKKTSKFLRVRLGDGSVSSLLDQSDPGTTDSSEGNNDDVGGGPPVRGVWRKGGGHKLFP*

>Glyma.19g220000.2.p sequence-type=predicted peptide transcript=Glyma.19g220000.2 locus=Glyma.19g220000 ID=Glyma.19g220000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRLCCICKTECNLVFATKALGDYTRMINDFSTLPSEVREGKVGSYWYHEDTNTFFDDMDHYRMIKAMCRLSCSVCDKIEDQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHIISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLTKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAERTFRDQSTSSIGQIAVDDGNDDIDSLIQPFESLAAGGSESSARYLQALGHSSRNGPLEDSSFPPLPITSSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVVNSGNAWPAAGRGLVQTSSSIQATQRTTHGQLPAGSSRNTRDNVRIVHSASAPNLMENNSVEISISDFPPVSAAQVSKLPASSQSKLNVENFQSANKSLVEKIRGALDFDEERYSIFKDISAQYRQGTIDTGTYVDYVQQFGLSHLVLELARLCPDTQKQKELIEAHNASLQRDAFPEINLVRGTASTHHKDGNLNKKGKGKSVDSRGSNSTEKLADSFLSTVHQLQANYKSSEEKVEVLSRGDYRTDRGKLKIKQQIDSNPGSQPTMKLGGQTETSNGSLSDQSKEDGGGGNKQRKKTSKFLRVRLGDGSVSSLLDQSDPGTTDSSEGNNDDVGGGPPVRGVWRKGGGHKLFP*

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