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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62310.1 | AT | RNA helicase family protein | JGI | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0004004 | GO-mf | ATP-dependent RNA helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008026 | GO-mf | ATP-dependent helicase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG0925 | KOG | mRNA splicing factor ATP-dependent RNA helicase | JGI | N/A | IEA |
| PTHR18934 | Panther | ATP-DEPENDENT RNA HELICASE | JGI | N/A | IEA |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | N/A | IEA |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | N/A | IEA |
| PF04408 | PFAM | Helicase associated domain (HA2) | JGI | N/A | IEA |
| PF07717 | PFAM | Oligonucleotide/oligosaccharide-binding (OB)-fold | JGI | N/A | IEA |
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Glyma.19g218200 not represented in the dataset |
Glyma.19g218200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g221200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g40600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g218200.1 sequence-type=CDS polypeptide=Glyma.19g218200.1.p locus=Glyma.19g218200 ID=Glyma.19g218200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTACAGAGAGAAAGAGGAAGGTGAGCTTGTTTGATGTGGTAGACGATTCTGCGGCGAAGATGGCGAAATCCAATGGCGGCGCCGCTGCTAATAATCTCACCAATCATTGGACCGCAAGGCCTTACTCCCAAAGGTACTTCGAGATTTTGGAGAAGAGAAAGACCCTCCCCGTTTGGCACCAGAAAGAAGAGTTTTTGCAAGTTCTCAAAGATAACCAGACTTTGATTCTCGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAATTAGAGACACCGGATAAACGTAGGAAGATGATGGTAGCCTGCACTCAGCCTCGGAGAGTAGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAAGACGGTTTTGAAGTATCTTACGGATGGTATGCTCTTAAGAGAAGCGATGACAGATCCGCTTTTGGAACGGTACAAGGTTATTATTCTTGATGAGGCACATGAGAGGACTTTGGCCACGGATGTGCTATTTGGCCTTCTGAAGGAAGTGCTTAAAAATCGACCTGACATGAAGTTGGTTGTTATGAGTGCGACTCTTGAAGCTGAAAAGTTTCAGGGTTATTTTTTCGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACGCAGGAACCTGAAAGGGATTACTTGGAGGCCGGCATTAGGACAGTGGTACAGATACACATGTGTGAGCCTCCAGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGGCCTGTCAAAGTTGTACCCCTGTATTCTACTCTTCCTCCTGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGACCTCCTGGAAGGAAGATTGTGGTATCAACTAACATAGCCGAAACTTCCTTAACAATTGATGGTATTGTTTATGTCATTGACCCTGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAATTCGTGTGGAGTCTTTATTAGTGTCACCAATATCGAAAGCTAGTGCACATCAGAGATCAGGACGTGCTGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTACACTGAGAAAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAAATATTGAGATCAAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGACGATCTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCCGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGACGATGGTAACTTAACTAAACTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCTCAGATGTCAAAGATGCTCGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGATGGAGATCATCTCACTCTGTTGAATGTCTATCATGCGTACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCATAGGGCATTGAAATCAGCTGATAATGTTAGACAACAATTAGTGCGTATCATGTCCCGGTTTAATCTGAAGCTATGCAGCACTGACTTTAATAGCCGTGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCCAATTGCCTGGACCACAAGCCTGAATGGGTCATTTATAATGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGTGGTGAATGGTTGGTTGATATAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAACGTGTCCTTGAGAGACTTTACAAGAAGCGAGAAAAGGAAAAGGAGGAAGCCAGGAGCCGCAGATGA
>Glyma.19g218200.1.p sequence-type=predicted peptide transcript=Glyma.19g218200.1 locus=Glyma.19g218200 ID=Glyma.19g218200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGTERKRKVSLFDVVDDSAAKMAKSNGGAAANNLTNHWTARPYSQRYFEILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMSRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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