SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01970.1 | AT | stachyose synthase | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0047268 | GO-mf | galactinol-raffinose galactosyltransferase activity | EnsemblGenomes | N/A | IEA |
| PF05691 | PFAM | Raffinose synthase or seed imbibition protein Sip1 | JGI | N/A | IEA |
| PWY-5337 | SoyCyc9 | stachyose biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5338 | SoyCyc9 | galactosylcyclitol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-51278 | SoyCyc9-rxn | galactosyltransferase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| STS | stachyose synthase |
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Glyma.19g217700 not represented in the dataset |
Glyma.19g217700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g40550 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g217700.1 sequence-type=CDS polypeptide=Glyma.19g217700.1.p locus=Glyma.19g217700 ID=Glyma.19g217700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTCCTCCAAACAATCCAGTGAATTCCACCTTGGGATTTAAGTCACTGGAAAAGGTTTTTGATTTATGTGACGGGAAATTCACCGTGAGAGGTGTGCCATTACTCTCTCAGGTACCCAATAACGTCACTTTCAGTTCCTTCTCCTCAATCTGTGAACCCCGTGACGCCCCACCTTCCATCCTTCAACGTGTCATTGCCGTGTCACACAAAGGTGGCTTCTTCGGATTCTCCCAGGTTTCTCCCTCCGACAGATTAACAAACTCCTTAGGTAGTTTCAGTGGCAGAAACTTCCTTAGCATCTTCAGGTTCAAAACATGGTGGTCTACCCAGTGGGTAGGAAATTCCGGTTCAGACCTTCAAATGGAAACCCAGTGGGTCCTCATAGAAATCCCCGAAATAAAATCCTATGTTGTAATCATTCCCATCATTGAAAAATCTTTCAGGTCCGCACTTCACCCTGGCTCTGATGGCCATGTCATGATTTGTGCTGAGAGTGGTTCAACTCAAGTGAAAGCATCGAGTTTCGGTGCAATTGCTTATGTCCACGTTTCTGAGAACCCTTACAACGTGATGAAAGAAGCCTATAGTGTTCTCAGGGTTCACCTCGATTCGTTCAGGTTGTTGGAGGAGAAAACGGTGCCAAAAATTGCTGACAAGTTCGGTTGGTGCACTTGGGATGCGTTCTACTTAACCGTGAACCCTGTTGGGGTTTGGCATGGGCTTAAGGATTTTGCCGAGGGTGGGGTGGCTCCGAGGTTTGTTATCATTGATGATGGCTGGCAAAGTGTGAATTTTGATGGTGATGACCCCAACGTGGATGCTAAGAATCTTGTTCTTGGCGGGGAACAAATGACTGCGAGGCTTCATAGATTTGAAGAATGTGACAAGTTTGGAAGTTACCAAAAGGGGCTCCTTTTGGGTCCTAATGCTCCTTCTTTTAACCCAAAGACGGTTAAGGAGTTGATTGCGAAGGGGATAGAAGTTGAGCGTTTGGGGAAGCTGCGTGATGAGGCTGTTTCGTCTGGGGTTTCTGATTTGAGTTTGACCGAGATTGAGTCGAGGATTGTGAAGGTGAAAAAGGAAATTGATGATCTCTTTGGTGGGGAGGGAAAGGAGAACAAAGAATTATGTGGAGGGTGTTGTTGCAAAGCAAATGAGTGTGGTGGGATTAAGGCTTTCATAAGGGACTTGAGGACTGAATTCAAAGGTTTGGATGATGTCTATGTGTGGCATGCCCTTTGTGGCTCGTGGGGTGGTGTGAGGCCAGGAGCCACACACTTGAATTCCAAAATAACACCTTGCAAACTCTCCCCTGGCCTTGATGGGACCATGCAAGATCTTGCTGTGGTTAAAATAGTGGAAGGTTCCATAGGACTTGTTCATCCTGATCAAGCTAATGACTTGTACGATTCCATGCACTCTTATCTTGCCCAATCTGGTGTTACCGGAGTCAAAATTGACGTCTTTCATAGTCTTGAATATGTGTGCGAGGAATATGGAGGCAGAGTCGAGCTTGCAAAGGCTTATTACGATGGGTTGACAAACTCTATTGTCAAGAATTTTAATGGAAGTGGAATCATCGCTAGCATGCAGCAGTGCAACGACTTTTTCTTCCTTGGAACCAAGCAAATTCCCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGACCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAAGGGGTGCACATGATTCACTGTGCCTACAACAGTTTGTGGATGGGGCAGATGATTCAGCCCGATTGGGACATGTTCCAATCGGATCATGTGTGTGCCAAATTTCATGCGGGTTCGAGGGCTATTTGTGGCGGTCCTGTCTATGTAAGTGACAGTGTGGGCTCTCATGACTTTGATCTCATTAAGATGCTTGTGTTCCCTGATGGTACCGTGCCCAAATGCATACATTTTGCACTTCCAACAAGAGATTGCCTTTTCAAGAACCCTCTCTTTGACCAAAAAACCGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCTAAGATGAAGAAGATCAAGGGTTTCTCTGAATGCTACAGGCCAATTTCTTGTACTGTGCATGTAACTGAGGTTGAATGGGACCAAAAGAAAGAAGCAGTTCACATGGGTAAGGCAGAGGAGTATGTCGTGTATCTCAATCAGGCTGAGGAACTGCATTTCATGACCCCAAAGTCTGAACCACTCCAATTTACTATTCAACCTTCCACTTTTGAGATCTACAACTTTGTCCCAGTTGAAAAGCTAGGTGGCAGCATCAAATTTGCACCAATTGGGCTCACAAACATGTTCAACAGTGGAGGGACAATTCAAGAATTGGAGTGTGTTGAGAAGGGTGCAAAGGTTAAGGTTAAGGGTGATGGGAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGTTGCTTTTGAGTGGCTCCCTGATGGAAAACTCACTCTCAACCTTGCTTGGATTGAAGAGAATGGCGGGGTTTCTGATTTGGCAATTTTCTTCTAG
>Glyma.19g217700.1.p sequence-type=predicted peptide transcript=Glyma.19g217700.1 locus=Glyma.19g217700 ID=Glyma.19g217700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAPPNNPVNSTLGFKSLEKVFDLCDGKFTVRGVPLLSQVPNNVTFSSFSSICEPRDAPPSILQRVIAVSHKGGFFGFSQVSPSDRLTNSLGSFSGRNFLSIFRFKTWWSTQWVGNSGSDLQMETQWVLIEIPEIKSYVVIIPIIEKSFRSALHPGSDGHVMICAESGSTQVKASSFGAIAYVHVSENPYNVMKEAYSVLRVHLDSFRLLEEKTVPKIADKFGWCTWDAFYLTVNPVGVWHGLKDFAEGGVAPRFVIIDDGWQSVNFDGDDPNVDAKNLVLGGEQMTARLHRFEECDKFGSYQKGLLLGPNAPSFNPKTVKELIAKGIEVERLGKLRDEAVSSGVSDLSLTEIESRIVKVKKEIDDLFGGEGKENKELCGGCCCKANECGGIKAFIRDLRTEFKGLDDVYVWHALCGSWGGVRPGATHLNSKITPCKLSPGLDGTMQDLAVVKIVEGSIGLVHPDQANDLYDSMHSYLAQSGVTGVKIDVFHSLEYVCEEYGGRVELAKAYYDGLTNSIVKNFNGSGIIASMQQCNDFFFLGTKQIPMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCAYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPVYVSDSVGSHDFDLIKMLVFPDGTVPKCIHFALPTRDCLFKNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKMKKIKGFSECYRPISCTVHVTEVEWDQKKEAVHMGKAEEYVVYLNQAEELHFMTPKSEPLQFTIQPSTFEIYNFVPVEKLGGSIKFAPIGLTNMFNSGGTIQELECVEKGAKVKVKGDGRFLAYSSESPKKFQLNGSDVAFEWLPDGKLTLNLAWIEENGGVSDLAIFF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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