Glyma.19g215300

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Report for Sequence Feature Glyma.19g215300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46825153
stop:	46829598
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g215300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06790.1	AT	RNA polymerase Rpb7 N-terminal domain-containing protein	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	JGI	N/A	IEA
GO:0006384	GO-bp	transcription initiation from RNA polymerase III promoter	EnsemblGenomes	N/A	IEA
GO:0005666	GO-cc	DNA-directed RNA polymerase III complex	EnsemblGenomes	N/A	IEA
GO:0001056	GO-mf	RNA polymerase III activity	EnsemblGenomes	N/A	IEA
GO:0003899	GO-mf	DNA-directed 5'-3' RNA polymerase activity	EnsemblGenomes	N/A	IEA
GO:0003899	GO-mf	DNA-directed RNA polymerase activity	JGI	N/A	IEA
KOG3297	KOG	DNA-directed RNA polymerase subunit E'	JGI	N/A	IEA
PTHR12709	Panther	DNA-DIRECTED RNA POLYMERASE II, III	JGI	N/A	IEA
PTHR12709:SF2	Panther		JGI	N/A	IEA
PF03876	PFAM	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	JGI	N/A	IEA
PF08292	PFAM	RNA polymerase III subunit Rpc25	JGI	N/A	IEA

Expression Patterns of Glyma.19g215300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g215300 not represented in the dataset	Glyma.19g215300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g215300

Paralog	Evidence	Comments
Glyma.03g218500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g215300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g40280	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g215300

Limit To All Plant Sequences

>Glyma.19g215300.2 sequence-type=transcript locus=Glyma.19g215300 ID=Glyma.19g215300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCTTCACAGGAACCCTAAATCTGAAACTACCTTGATTCCGCTCTGCCACGACTGAGAAAATAGCGACGCGGAAACACGCTCGTCATCACGATCCTGCCATCCAGCGCGGCGTGTCCAGCGATTCCGCTCTCCGATGAGTCTGCGCAGGTTGAAGAATCGCGAGGCCAGCTGCCGGTGAAGAATCGCGCGATTTGTCTGGAAGTCGCGATTCATCCCCGATACAGAGATTCAACCACGATTCAGGAACAAAAACGAGACAACCTCCTATtcgtatcggtagcagctggaatcgtatcgaatcgtgtgaatacgtatcgtgaatcGTTCAATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAAATGAGTCCAAAAATGGTCGGATAGAAGATATTTCGGATGCTTTCTGCATGATTTTTAATTTAACAACTCAAGTTACAACTCGACAACAGTATACTTTTGTTAAATTCCTTTGCTTCATAAAGTATTTAATTCAATGAAATCATTGTTTTGCCTTTTAATTTCAGCGTCCTGAATACCCACGTACAGGAAGAGTAAAAGTGTTTGTACATAAGCTTTTGGGATCCA

>Glyma.19g215300.3 sequence-type=transcript locus=Glyma.19g215300 ID=Glyma.19g215300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCTTCACAGGAACCCTAAATCTGAAACTACCTTGATTCCGCTCTGCCACGACTGAGAAAATAGCGACGCGGAAACACGCTCGTCATCACGATCCTGCCATCCAGCGCGGCGTGTCCAGCGATTCCGCTCTCCGATGAGTCTGCGCAGGTTGAAGAATCGCGAGGCCAGCTGCCGGTGAAGAATCGCGCGATTTGTCTGGAAGTCGCGATTCATCCCCGATACAGAGATTCAACCACGATTCAGGAACAAAAACGAGACAACCTCCTATtcgtatcggtagcagctggaatcgtatcgaatcgtgtgaatacgtatcgtgaatcGTTCAATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAAATGAGTCCAAAAATGGTCGGATAGAAGATATTTCGGATGCTTTCTGCATGATTTTTAATTTAACAACTCAAGTTACAACTCGACAACAGTATACTTTTGTTAAATTCCTTTGCTTCATAAAGTATTTAATTCAATGAAATCATTGTTTTGCCTTTTAATTTCAGCGTCCTGAATACCCACGTACAGGAAGAGTAAAAGTGTTTGTACATAAGCTTTTGGGATCCA

>Glyma.19g215300.4 sequence-type=transcript locus=Glyma.19g215300 ID=Glyma.19g215300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCCTTCACAGGAACCCTAAATCTGAAACTACCTTGATTCCGCTCTGCCACGACTGAGAAAATAGCGACGCGGAAACACGCTCGTCATCACGATCCTGCCATCCAGCGCGGCGTGTCCAGCGATTCCGCTCTCCGATGAGTCTGCGCAGGTTGAAGAATCGCGAGGCCAGCTGCCGGTGAAGAATCGCGCGATTTGTCTGGAAGTCGCGATTCATCCCCGATACAGAGATTCAACCACGATTCAGGAACAAAAACGAGACAACCTCCTATtcgtatcggtagcagctggaatcgtatcgaatcgtgtgaatacgtatcgtgaatcgtaCGATACTAGTTTTAGAACATTGCTTTGAAATGAACTTTCTGGTTCAATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAAATGAGTCCAAAAATGGTCGGATAGAAGATATTTCGGATGCTTTCTGCATGATTTTTAATTTAACAACTCAAGTTACAACTCGACAACAGTATACTTTTGTTAAATTCCTTTGCTTCATAAAGTATTTAATTCAATGAAATCATTGTTTTGCCTTTTAATTTCAGCGTCCTGAATACCCACGTACAGGAAGAGTAAAAGTGTTTGTACATAAGCTTTTGGGATCCA

>Glyma.19g215300.5 sequence-type=transcript locus=Glyma.19g215300 ID=Glyma.19g215300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTAGTTTCCATTGTGAACCATATTTTGTAATTGACTTAGTTTACTTGGCTTCAATTCGAGTTTCTGTAATCATGTCAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAAATGAGTCCAAAAATGGTCGGATAGAAGATATTTCGGATGCTTTCTGCATGATTTTTAATTTAACAACTCAAGTTACAACTCGACAACAGTATACTTTTGTTAAATTCCTTTGCTTCATAAAGTATTTAATTCAATGAAATCATTGTTTTGCCTTTTAATTTCAGCGTCCTGAATACCCACGTACAGGAAGAGTAAAAGTGTTTGTACATAAGCTTTTGGGATCCA

Coding sequences of Glyma.19g215300

Limit To All Plant Sequences

>Glyma.19g215300.1 sequence-type=CDS polypeptide=Glyma.19g215300.1.p locus=Glyma.19g215300 ID=Glyma.19g215300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAA

>Glyma.19g215300.2 sequence-type=CDS polypeptide=Glyma.19g215300.2.p locus=Glyma.19g215300 ID=Glyma.19g215300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTATGATGATGGTCTAG

>Glyma.19g215300.3 sequence-type=CDS polypeptide=Glyma.19g215300.3.p locus=Glyma.19g215300 ID=Glyma.19g215300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAA

>Glyma.19g215300.4 sequence-type=CDS polypeptide=Glyma.19g215300.4.p locus=Glyma.19g215300 ID=Glyma.19g215300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTATCTCAGTAAAATCGAACACGAATTGCCCCTGCCTCCTTCTCGTCTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAGCTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTAGTGTCTATGATATCAGATCGATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAA

>Glyma.19g215300.5 sequence-type=CDS polypeptide=Glyma.19g215300.5.p locus=Glyma.19g215300 ID=Glyma.19g215300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTCGTCCATTTGAGAAGGAGATTATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTATGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACCGAAAAAAAGGGTATCCTCTGGCCAAGAGTCAACGGCTAATCCCTCAAGCAAGAAAGGCATGTGGTATTGGGATTATGATGAACAAGAATATCCTATTACTGATGTGATCAAATTCCGAGTTACTAATGTGAGTTATCCCCAAATTCCAGTTGAACAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGGTCTCTGGAGCGATAGATGATGATGGTCTAGGCCCTATTTCTTGGTGGTTTGGAGATGAGGATGAGGACGAGTAA

Predicted protein sequences of Glyma.19g215300

Limit To All Plant Sequences

>Glyma.19g215300.1.p sequence-type=predicted peptide transcript=Glyma.19g215300.1 locus=Glyma.19g215300 ID=Glyma.19g215300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYLSKIEHELPLPPSRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFYDDIYIPASRLPDPNHFVETEPKKRVSSGQESTANPSSKKGMWYWDYDEQEYPITDVIKFRVTNVSYPQIPVEQPKESKPFAPMLVSGAIDDDGLGPISWWFGDEDEDE*

>Glyma.19g215300.2.p sequence-type=predicted peptide transcript=Glyma.19g215300.2 locus=Glyma.19g215300 ID=Glyma.19g215300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYLSKIEHELPLPPSRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFYDDIYIPASRLPDPNHFVETEPKKRVSSGQESTANPSSKKGMWYWDYDEQEYPITDVIKFRVTNVSYPQIPVEQPKESKPFAPMLVSMMMV*

>Glyma.19g215300.3.p sequence-type=predicted peptide transcript=Glyma.19g215300.3 locus=Glyma.19g215300 ID=Glyma.19g215300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYLSKIEHELPLPPSRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFYDDIYIPASRLPDPNHFVETEPKKRVSSGQESTANPSSKKGMWYWDYDEQEYPITDVIKFRVTNVSYPQIPVEQPKESKPFAPMLVSGAIDDDGLGPISWWFGDEDEDE*

>Glyma.19g215300.4.p sequence-type=predicted peptide transcript=Glyma.19g215300.4 locus=Glyma.19g215300 ID=Glyma.19g215300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYLSKIEHELPLPPSRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFYDDIYIPASRLPDPNHFVETEPKKRVSSGQESTANPSSKKGMWYWDYDEQEYPITDVIKFRVTNVSYPQIPVEQPKESKPFAPMLVSGAIDDDGLGPISWWFGDEDEDE*

>Glyma.19g215300.5.p sequence-type=predicted peptide transcript=Glyma.19g215300.5 locus=Glyma.19g215300 ID=Glyma.19g215300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFRPFEKEIITARLLSSDADGLRLTIGFYDDIYIPASRLPDPNHFVETEPKKRVSSGQESTANPSSKKGMWYWDYDEQEYPITDVIKFRVTNVSYPQIPVEQPKESKPFAPMLVSGAIDDDGLGPISWWFGDEDEDE*

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