Glyma.19g213300

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Report for Sequence Feature Glyma.19g213300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46666253
stop:	46671097
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g213300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40940.1	AT	ethylene response sensor 1	JGI	N/A	IEA
GO:0000160	GO-bp	phosphorelay signal transduction system	EnsemblGenomes	N/A	IEA
GO:0007165	GO-bp	signal transduction	EnsemblGenomes	N/A	IEA
GO:0007165	GO-bp	signal transduction	JGI	N/A	IEA
GO:0016310	GO-bp	phosphorylation	EnsemblGenomes	N/A	IEA
GO:0023014	GO-bp	signal transduction by protein phosphorylation	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0000155	GO-mf	phosphorelay sensor kinase activity	EnsemblGenomes	N/A	IEA
GO:0000155	GO-mf	phosphorelay sensor kinase activity	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0016772	GO-mf	transferase activity, transferring phosphorus-containing groups	EnsemblGenomes	N/A	IEA
KOG0519	KOG	Sensory transduction histidine kinase	JGI	N/A	IEA
PTHR24423	Panther	TWO-COMPONENT SENSOR HISTIDINE KINASE	JGI	N/A	IEA
PTHR24423:SF158	Panther		JGI	N/A	IEA
PF00512	PFAM	His Kinase A (phospho-acceptor) domain	JGI	N/A	IEA
PF01590	PFAM	GAF domain	JGI	N/A	IEA
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI	N/A	IEA

Expression Patterns of Glyma.19g213300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g213300 not represented in the dataset	Glyma.19g213300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g213300

Paralog	Evidence	Comments
Glyma.03g216700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g213300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g40090	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g213300

Limit To All Plant Sequences

>Glyma.19g213300.2 sequence-type=transcript locus=Glyma.19g213300 ID=Glyma.19g213300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGGATAAAGAAAGAAGGCAAATGGGAATTTGGACCGGATACGCTGGATTTCACACCCATCTGTCAACACTCGAAGGAAAAGTTAACACACATTCATATAGTGTGGTCCAAATTCAAAGAAACTTCACAATGCCCATGGCCTAGAAAGTTGATTGATCACACAAACACCAAATCAGAATTCAGAATTCAGAATTCAGAACTCGCGGTTTACTAATATTATTCTTTTGAAATTTATTTTATACGTACCCAGAAAAAGTGAAGCTGAGTAGGCCCAGGCCACCGTCCAATGAATTCCCATTTCCCAGCCTCTAAACAGAAAACTTTTGGCAAATATTACCAAAAATGAGAAAATAAAATAAAAAGGTGCCAGCCAATCCGAAAATGATGTGGCACGTGTGTAAAGCGAAAAGTAAAATGAGAGAAGCATGGAAAAAAGGGCACGCCCGAGTGGGAGTAGGCGTTTGCCATGCTTGTCCGTGAGGGATGGGCTTAACGTTAATCTCATGTCATGCTTTTTAACCCACTCACACACTCTCTCTTCTTTCTTCATGCCCGCCTCCCTTTCTTCTTCCTTTGATCCGTTCATACGGTGGTTAGATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAATATCCAAGACACCAACATTGCATACCTTTCGATCACAGTCGACAAGATGGAGTACACATACTTTCATTTTGCATGTGCTAAATTGTATAATTTACAGTTTGCAGCTGTAGAATAGGAATACTATGTCAGGCATATTTCTAACAAACAAGTCTTATGTGAACTCCTGCCGTATTAACTAGAATACAATGCAATGAAACAAATTTGAGAGACAATCCGTTACTTAATTTGACTTGTAGTATATATTGTGTTAGTGCCTTGTTACTTTTTTTCCGGCTTTTTAATGAACCAATGTTTACTTATATTTCC

Coding sequences of Glyma.19g213300

Limit To All Plant Sequences

>Glyma.19g213300.1 sequence-type=CDS polypeptide=Glyma.19g213300.1.p locus=Glyma.19g213300 ID=Glyma.19g213300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

>Glyma.19g213300.2 sequence-type=CDS polypeptide=Glyma.19g213300.2.p locus=Glyma.19g213300 ID=Glyma.19g213300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

Predicted protein sequences of Glyma.19g213300

Limit To All Plant Sequences

>Glyma.19g213300.1.p sequence-type=predicted peptide transcript=Glyma.19g213300.1 locus=Glyma.19g213300 ID=Glyma.19g213300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDMSAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLLEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEKGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGIPPQEIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPDKGSTATFIIKLEICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF*

>Glyma.19g213300.2.p sequence-type=predicted peptide transcript=Glyma.19g213300.2 locus=Glyma.19g213300 ID=Glyma.19g213300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDMSAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLLEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEKGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGIPPQEIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPDKGSTATFIIKLEICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF*

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