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Report for Sequence Feature Glyma.19g210400

Feature Type:gene_model
Chromosome:Gm19
Start:46449086
stop:46451141
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g210400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27720.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000956GO-bp nuclear-transcribed mRNA catabolic process EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
KOG3448 KOG Predicted snRNP core protein JGI N/AIEA
PTHR23338Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.19g210400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g210400 not represented in the dataset
Glyma.19g210400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g210400
ParalogEvidenceComments
Glyma.03g213600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.19g210400
>Glyma.19g210400.1 sequence-type=CDS polypeptide=Glyma.19g210400.1.p locus=Glyma.19g210400 ID=Glyma.19g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACATCTAAAGACGGAGATAGATTTTGGAGGATGCCTGAATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGGTGTGTATTGTGTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATGGTCCTGGTGGGCGCCCAGCAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTGCCAAGGGAGCTGGAGGAGGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGGGCGAGGTAGAGGCTGATTCTAAAAAGTGGCAGGAACTACTCAATGTGTATCGGTAG
Predicted protein sequences of Glyma.19g210400
>Glyma.19g210400.1.p sequence-type=predicted peptide transcript=Glyma.19g210400.1 locus=Glyma.19g210400 ID=Glyma.19g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVCIVLLTKFKKKPRAVQIANHLEWDVEGEEAERMVLVGAQQKELGVVLMMVVPRELEEAEAGVVPVESLVETEGEVEADSKKWQELLNVYR*






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