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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G03000.1 | AT | peroxin 6 | JGI | N/A | IEA |
GO:0006281 | GO-bp | DNA repair | JGI | N/A | IEA |
GO:0006310 | GO-bp | DNA recombination | JGI | N/A | IEA |
GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
GO:0009378 | GO-mf | four-way junction helicase activity | JGI | N/A | IEA |
KOG0736 | KOG | Peroxisome assembly factor 2 containing the AAA+-type ATPase domain | JGI | N/A | IEA |
PTHR23077 | Panther | AAA-FAMILY ATPASE | JGI | N/A | IEA |
PTHR23077:SF9 | Panther | PEROXISOME ASSEMBLY FACTOR 2 | JGI | N/A | IEA |
PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | N/A | IEA |
Glyma.19g208300 not represented in the dataset |
Glyma.19g208300 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.03g211100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma19g39580 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g208300.2 sequence-type=transcript locus=Glyma.19g208300 ID=Glyma.19g208300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CGGCATAATATTATTCCCAGGATAGAAGAAGGCATGAATCGATGAAGTAGCCCGCTCTCATAACAAACCACCAACGACCAACATTGGGAAAGGCAAAGAAAAAATTGGTGGAAGAAAGAAGCTAAGGTAGAAAAAAGCAGAGCTTTAGATTGAAAAAAATGGTGGAAAGGAGGAGAAAGCCTCTGATACTGTGTTCCACCAAACATCTCATAAATTCCACTGTTCCAACCAACAACCTCTTCCCCCATGAATCTCTTCCCACTTTCCGTTTACCCGTTGGGATTCTCCGATTCTCCAACCCCGCAAACCCCTCTCTCGACCACTCTGCACTTCTCGCTCTCTCCACTAGTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCTCCGGTTTTGGTCAAGAATGTTGATACGAATACACAGAAAATTGCAGTGGCTATTGCTCTTGATCCACCAGGCACCGCCACTAATATGGACTCACCCTCTTCTTCAAATTCTCGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTTCTAGTGGTTCTGTGTTAGATGATCAAGTAGCTTATATATCTCCTCTTTTAGCCTTTAACCTTAACTTGCACGTGACATGCTTAAAATCTATTCTTCACCACGGGCAAGATGCTTTAGCTTCTTATTTCAAAAGGGGTGATGAGGATGCCACTAAAAGCACTGTGGATTTTGTTATCAACGTAGAATTGGAACCACTTGCTCAACCTCCAAAATTTGCCTCTCTCCTGAGGGTTTCTTTTGTGAAGATACCTGAATGTGGCATCCTTGAATCCATTAGAGCAAGTTCGCCTGTTGAGTCACAAGAGCGGCAAGACATGATCGACTTGGAGTTGCAAAAGTACTTTGAAGTCGATAGGTATTTGTCGAAGGGAGATGTTTTTGGAATTAAAATAAGCTGGAACTGCAATTCCCCCATTTGCATTCCTTGCAATCAAAGATCATTAAATAAAAATGACAACCTTGTCTGCTTCAAGGTTGTTGGTATGGAACCTTCAGATGAGCCGGTTTTCCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTGATTGGTGGACAAGCAGAAGGACCTGTGCCTTTGCAAGGGGACACTGTGAACATCTTGGCTTCAATACTTACACCAACTTTTTGTCCGTCAGTGCTTTCTTCCAAGTTTAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGGTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGTCAACTGGGCGTGCATGTGGTGGAATATAACTGTCATGATCTAATGGTGTCTGATAGGCAATCTGTTGCTTTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCACCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGTGATTCACAATCGCCTGAGGTTTCACCACATGACCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAATGAACATGGTGATAGTAGTGTCCCAGGGAAATCAAACAGTGAATCTGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTATTGATTGCTGCTGCAGACAGTTCAGAAGGTCTGCCTTCGACTATCAGACGCTGTTTTAGCCACGAAATAAGCATGGGGGCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCCGGACTCCTCTCTAATACTAATTCAGAAGCTTTAGTAAAAGAAATAGTTGGGCAGACATCTGGTTACATGCCCAGGGATATATGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAGACAAAGATGTACATGATGATGTAGGTAGTTCCCTTAGTTCCAAGATGGCAGAGGACAACAATCACGGGAAAGTTTCACCTCAGATTACTGGAAAAGAAGACTTGTTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCGAATGTGAAATGGGAGGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGGTTAGGTATAAGAATAAAAATTAAAAAGTGCTTCCGGAGAGTCGAAATTAAATTTGAATGCAGTTCTCTCCTATGTTCAACATGGAAGCTATGAGCTATCAATAATGGATTCTGCTAAGAAGAGATTGAATAGGATCTTTCCGCTAGAGCAAGAAGATATGTCCCTTCTAACCATAAAAAATATGTGGTTTTCCTCTGCAGTATCGCTACATATGTTGGCTCTTTCTGTTGAATGGAAAATAATGCGTGCTTCTCTTTCAAGTCACTTTTCTTTTCTGAGAAATTCCCGTGCCTTCTTGCATCTCTATTTTAATACTTATTAAATTAATGTTACCTGGGGCATACTGTTTATTGTCTGTAATTTCTGAAAATCTGATTCAT
>Glyma.19g208300.1 sequence-type=CDS polypeptide=Glyma.19g208300.1.p locus=Glyma.19g208300 ID=Glyma.19g208300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGGAAAGGAGGAGAAAGCCTCTGATACTGTGTTCCACCAAACATCTCATAAATTCCACTGTTCCAACCAACAACCTCTTCCCCCATGAATCTCTTCCCACTTTCCGTTTACCCGTTGGGATTCTCCGATTCTCCAACCCCGCAAACCCCTCTCTCGACCACTCTGCACTTCTCGCTCTCTCCACTAGTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCTCCGGTTTTGGTCAAGAATGTTGATACGAATACACAGAAAATTGCAGTGGCTATTGCTCTTGATCCACCAGGCACCGCCACTAATATGGACTCACCCTCTTCTTCAAATTCTCGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTTCTAGTGGTTCTGTGTTAGATGATCAAGTAGCTTATATATCTCCTCTTTTAGCCTTTAACCTTAACTTGCACGTGACATGCTTAAAATCTATTCTTCACCACGGGCAAGATGCTTTAGCTTCTTATTTCAAAAGGGGTGATGAGGATGCCACTAAAAGCACTGTGGATTTTGTTATCAACGTAGAATTGGAACCACTTGCTCAACCTCCAAAATTTGCCTCTCTCCTGAGGGTTTCTTTTGTGAAGATACCTGAATGTGGCATCCTTGAATCCATTAGAGCAAGTTCGCCTGTTGAGTCACAAGAGCGGCAAGACATGATCGACTTGGAGTTGCAAAAGTACTTTGAAGTCGATAGGTATTTGTCGAAGGGAGATGTTTTTGGAATTAAAATAAGCTGGAACTGCAATTCCCCCATTTGCATTCCTTGCAATCAAAGATCATTAAATAAAAATGACAACCTTGTCTGCTTCAAGGTTGTTGGTATGGAACCTTCAGATGAGCCGGTTTTCCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTGATTGGTGGACAAGCAGAAGGACCTGTGCCTTTGCAAGGGGACACTGTGAACATCTTGGCTTCAATACTTACACCAACTTTTTGTCCGTCAGTGCTTTCTTCCAAGTTTAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGGTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGTCAACTGGGCGTGCATGTGGTGGAATATAACTGTCATGATCTAATGGTGTCTGATAGGCAATCTGTTGCTTTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCACCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGTGATTCACAATCGCCTGAGGTTTCACCACATGACCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAATGAACATGGTGATAGTAGTGTCCCAGGGAAATCAAACAGTGAATCTGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTATTGATTGCTGCTGCAGACAGTTCAGAAGGTCTGCCTTCGACTATCAGACGCTGTTTTAGCCACGAAATAAGCATGGGGGCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCCGGACTCCTCTCTAATACTAATTCAGAAGCTTTAGTAAAAGAAATAGTTGGGCAGACATCTGGTTACATGCCCAGGGATATATGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAGACAAAGATGTACATGATGATGTAGGTAGTTCCCTTAGTTCCAAGATGGCAGAGGACAACAATCACGGGAAAGTTTCACCTCAGATTACTGGAAAAGAAGACTTGTTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCGAATGTGAAATGGGAGGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAGTGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCAGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGAGGTGCCTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGGTTAAGTGATTCCACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGACAAACTGCTATATGTCGGAGTTAACTCCGATGCATCTTACAGGGAGCGGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCTTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGCAAAGTTTTGAGAGCAAATCCAGAGTCTTCCAGCCAAGATAATGAAGCAGATTCTGTTGTTGTGGAATACAATGATTTCATCCAGGTCTTAGAAGAGCTGTCGCCTTCCCTCTCCATGGCTGAGCTCAACAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTAAATGA >Glyma.19g208300.2 sequence-type=CDS polypeptide=Glyma.19g208300.2.p locus=Glyma.19g208300 ID=Glyma.19g208300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGGAAAGGAGGAGAAAGCCTCTGATACTGTGTTCCACCAAACATCTCATAAATTCCACTGTTCCAACCAACAACCTCTTCCCCCATGAATCTCTTCCCACTTTCCGTTTACCCGTTGGGATTCTCCGATTCTCCAACCCCGCAAACCCCTCTCTCGACCACTCTGCACTTCTCGCTCTCTCCACTAGTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCTCCGGTTTTGGTCAAGAATGTTGATACGAATACACAGAAAATTGCAGTGGCTATTGCTCTTGATCCACCAGGCACCGCCACTAATATGGACTCACCCTCTTCTTCAAATTCTCGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTTCTAGTGGTTCTGTGTTAGATGATCAAGTAGCTTATATATCTCCTCTTTTAGCCTTTAACCTTAACTTGCACGTGACATGCTTAAAATCTATTCTTCACCACGGGCAAGATGCTTTAGCTTCTTATTTCAAAAGGGGTGATGAGGATGCCACTAAAAGCACTGTGGATTTTGTTATCAACGTAGAATTGGAACCACTTGCTCAACCTCCAAAATTTGCCTCTCTCCTGAGGGTTTCTTTTGTGAAGATACCTGAATGTGGCATCCTTGAATCCATTAGAGCAAGTTCGCCTGTTGAGTCACAAGAGCGGCAAGACATGATCGACTTGGAGTTGCAAAAGTACTTTGAAGTCGATAGGTATTTGTCGAAGGGAGATGTTTTTGGAATTAAAATAAGCTGGAACTGCAATTCCCCCATTTGCATTCCTTGCAATCAAAGATCATTAAATAAAAATGACAACCTTGTCTGCTTCAAGGTTGTTGGTATGGAACCTTCAGATGAGCCGGTTTTCCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTGATTGGTGGACAAGCAGAAGGACCTGTGCCTTTGCAAGGGGACACTGTGAACATCTTGGCTTCAATACTTACACCAACTTTTTGTCCGTCAGTGCTTTCTTCCAAGTTTAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGGTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGTCAACTGGGCGTGCATGTGGTGGAATATAACTGTCATGATCTAATGGTGTCTGATAGGCAATCTGTTGCTTTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCACCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGTGATTCACAATCGCCTGAGGTTTCACCACATGACCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAATGAACATGGTGATAGTAGTGTCCCAGGGAAATCAAACAGTGAATCTGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTATTGATTGCTGCTGCAGACAGTTCAGAAGGTCTGCCTTCGACTATCAGACGCTGTTTTAGCCACGAAATAAGCATGGGGGCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCCGGACTCCTCTCTAATACTAATTCAGAAGCTTTAGTAAAAGAAATAGTTGGGCAGACATCTGGTTACATGCCCAGGGATATATGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAGACAAAGATGTACATGATGATGTAGGTAGTTCCCTTAGTTCCAAGATGGCAGAGGACAACAATCACGGGAAAGTTTCACCTCAGATTACTGGAAAAGAAGACTTGTTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCGAATGTGAAATGGGAGGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGGTTAGGTATAAGAATAAAAATTAA
>Glyma.19g208300.1.p sequence-type=predicted peptide transcript=Glyma.19g208300.1 locus=Glyma.19g208300 ID=Glyma.19g208300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVERRRKPLILCSTKHLINSTVPTNNLFPHESLPTFRLPVGILRFSNPANPSLDHSALLALSTSLLKTLSITSGSPVLVKNVDTNTQKIAVAIALDPPGTATNMDSPSSSNSRIMLVFPSCDFPSSGSVLDDQVAYISPLLAFNLNLHVTCLKSILHHGQDALASYFKRGDEDATKSTVDFVINVELEPLAQPPKFASLLRVSFVKIPECGILESIRASSPVESQERQDMIDLELQKYFEVDRYLSKGDVFGIKISWNCNSPICIPCNQRSLNKNDNLVCFKVVGMEPSDEPVFRVNNTLTALVLVGSSPSALPPDLLIGGQAEGPVPLQGDTVNILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVARQLGVHVVEYNCHDLMVSDRQSVALAQAFKTARRYSPAILLLRHFDVFRDSQSPEVSPHDQRGNTSEVASVIRKFTEPVNEHGDSSVPGKSNSESVEKNAEKTSGHQVLLIAAADSSEGLPSTIRRCFSHEISMGALTEEQRAEMLFQSLQSVSGLLSNTNSEALVKEIVGQTSGYMPRDICALIADAGANLFPRNNAKVDKDVHDDVGSSLSSKMAEDNNHGKVSPQITGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLRANPESSSQDNEADSVVVEYNDFIQVLEELSPSLSMAELNKYEQLRDQFEGTSK* >Glyma.19g208300.2.p sequence-type=predicted peptide transcript=Glyma.19g208300.2 locus=Glyma.19g208300 ID=Glyma.19g208300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVERRRKPLILCSTKHLINSTVPTNNLFPHESLPTFRLPVGILRFSNPANPSLDHSALLALSTSLLKTLSITSGSPVLVKNVDTNTQKIAVAIALDPPGTATNMDSPSSSNSRIMLVFPSCDFPSSGSVLDDQVAYISPLLAFNLNLHVTCLKSILHHGQDALASYFKRGDEDATKSTVDFVINVELEPLAQPPKFASLLRVSFVKIPECGILESIRASSPVESQERQDMIDLELQKYFEVDRYLSKGDVFGIKISWNCNSPICIPCNQRSLNKNDNLVCFKVVGMEPSDEPVFRVNNTLTALVLVGSSPSALPPDLLIGGQAEGPVPLQGDTVNILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVARQLGVHVVEYNCHDLMVSDRQSVALAQAFKTARRYSPAILLLRHFDVFRDSQSPEVSPHDQRGNTSEVASVIRKFTEPVNEHGDSSVPGKSNSESVEKNAEKTSGHQVLLIAAADSSEGLPSTIRRCFSHEISMGALTEEQRAEMLFQSLQSVSGLLSNTNSEALVKEIVGQTSGYMPRDICALIADAGANLFPRNNAKVDKDVHDDVGSSLSSKMAEDNNHGKVSPQITGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQVRYKNKN*
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