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Report for Sequence Feature Glyma.19g206800

Feature Type:gene_model
Chromosome:Gm19
Start:46220427
stop:46224265
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g206800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62980.1AT F-box/RNI-like superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI N/AIEA
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI N/AIEA
PTHR23125:SF17Panther GRR1-LIKE PROTEIN 1-RELATED JGI N/AIEA

Proteins Associated with Glyma.19g206800
LocusGene SymbolProtein Name
TIR1C protein TRANSPORT INHIBITOR RESPONSE 1C

Expression Patterns of Glyma.19g206800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g206800
ParalogEvidenceComments
Glyma.03g209400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g206800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g39420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g206800
>Glyma.19g206800.1 sequence-type=CDS polypeptide=Glyma.19g206800.1.p locus=Glyma.19g206800 ID=Glyma.19g206800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGAATGGCGTACACGTTTTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATATGGAACGAGAGGGACAGGAACGCGATCTCGCTGGTGTGTAAGTCATGGTACGAGATCGAGAGGTGGTGCAGGAGGAAGGTGTTCGTGGGGAACTGCTACGCGGTGAGCCCTCTGATGGTGGTCAAGCGGTTCCCGGAGGTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTTGCGGACTTCAATTTGGTCCCCGATGGCTGGGGAGGTTACGTCTGCCCCTGGATCGCCGCCATGGCTCGCGCCTTCCCCTGCCTCGAAGAAATCAGGCTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAACTCATCGCTAAGTCCTTCAAGAACTTCAAGGTCTTGGTTCTCACTTCCTGTGAGGGTTTTACCACTGATGGACTTGCCGCCATTGCTGCCAACTGCAGGAATTTGAGGGAATTGGACTTGCAAGAGAGTGAAGTGGAGGAGGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTATACGTCATTAGTTTCACTTAACATCTCTTGCTTAAACAATGAGGTGAGTTTATCTGCGCTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCGGACCCTCCGTCTCAATCGTGCCGTGCCCCTTGATAGACTACCCAACCTACTTCTCCAGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCTGGCTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTCTACCCCATCTGCTCAAGGCTAACATCGCTAAACTTGAGTTATGCTATTATTCAAAGCTCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGATTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTTATGCCCTTGCTGCATCATGTAAGGATCTAAGAGAGTTAAGGGTGTTTCCTTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCGAATGCAGCCCTACATACAATTGCGCGGAACAGGACTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTCGGACTCCTGACTATCTAACCCATGAACCCCTGGATTCTGGTTTTGGGGCTATTGTAGAGCAATGCAAGGATCTTCAACGCCTATCCCTATCTGGTCTTCTTACTGACCGTGTTTTCGAGTATATCGGGACTTGTGGTAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTATCAGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCAAATGCTGAAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCGGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCAAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATGATTGTCCAGTTGAGAAGCTTTATATATACAGGACTATTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAAGGCTTGAGTGA
Predicted protein sequences of Glyma.19g206800
>Glyma.19g206800.1.p sequence-type=predicted peptide transcript=Glyma.19g206800.1 locus=Glyma.19g206800 ID=Glyma.19g206800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRMAYTFSFPEEVLEHVFSFIWNERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPLMVVKRFPEVRSIALKGKPHFADFNLVPDGWGGYVCPWIAAMARAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEEDLSGHWLSHFPDSYTSLVSLNISCLNNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLLQCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRTNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTCGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLRLE*






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