SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G58490.1 | AT | Phosphatidic acid phosphatase (PAP2) family protein | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| KOG2822 | KOG | Sphingoid base-phosphate phosphatase | JGI | N/A | IEA |
| PTHR14969 | Panther | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE | JGI | N/A | IEA |
| PTHR14969:SF4 | Panther | JGI | N/A | IEA | |
| PF01569 | PFAM | PAP2 superfamily | JGI | N/A | IEA |
| TRIGLSYN-PWY | SoyCyc9 | diacylglycerol and triacylglycerol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-55478 | SoyCyc9-rxn | phosphatidate phosphatase | Plant Metabolic Network | ISS |
|
Glyma.19g204500 not represented in the dataset |
Glyma.19g204500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g207000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g39180 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g204500.1 sequence-type=CDS polypeptide=Glyma.19g204500.1.p locus=Glyma.19g204500 ID=Glyma.19g204500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGGTGAGGGTGCAGCAGTGTGGCAAGGTGCGGTTTTAGGTGGAATAATCTTCTGGCTTGTTTCTGCTTCATACCTCAACGTTACTCGCAAACTTAGGTCTTTCTTACAACCTTGGGTTACTCATCACGTTGTCACTCAAACCCCTATTATCCTCAAGATCCAGAGTTACGGGTTTGGGTTCCTGGATGCACTTTTCTCTGGGTTGTCTTGCGTTGTTTCTGTGCCCTTCTACACTGCTTTTCTCCCTCTGCTATTCTGGAGTGGTCATGGCAAATTGGCGAGGCAGATGACGTTGTTGATGGCGTTTTGTGATTATCTTGGGAACTGCATAAAGGATGTGGTTTCAGCTCCAAGACCTGCTTCTCCACCTGTCAAGAGAGTAACTGCCACCAGAGATGAAGAGGATAATGCGTTAGAATATGGATTGCCTTCCTCTCACACACTTAACACAGTTTGCTTATCTGGCTACCTTTTGCACTATGTCCTGACTCATACTCAAATTCAAGGTGCCTATGTTACTTATCTTGGAGTTTCTCTTGCCTGCATGCTGGTGTTTTTCATTGGTTTGGGAAGAATTTATCTTGGCATGCATAGTGTGGTTGATGTTCTTGCTGGCCTTCTTATTGGACTCGTTGTCCTTGCATTTTGGCTTACGGTTGATGAATACATGGACAGTTTTGTGATCTCAGGACAAAATGAATTTGGTTTTGGCCCGGTTACGTCCTTTTGGGCTGCCTTGAGCTTTCTCTTGCTTTTTGCTTATCCAACTCCTGAACTTCCAACTCCAAGCTTTGAGTATCACACTGCTTTCGATGGTGTTGCATTGGGAATTGTCTCTGGGGTGCAACAAACATACCATCAATTTCACCATGCCAATGTTCCTCGTTTGTTCTCGTCAGAGCTGACTATACCTGTATTTCTGGGAAGGATGCTATTGGGAATACCTACAATTCTAATTGTGAAGTTCTGCAGTAAGACTCTCGCAAAATGGACCATTCCTGTGGTAGCGAACACCTTGGGCATCCCAATAAAATCAACCGGCTATATACCTACACTGAATGGATCTGTGACAGGTAAAATGTCTGATAAGCTTAAACAAGGTTACTTGCAAAAGCTCCTTTCCCAGCACAAGGCATTCGATGTTGATACCGGAATTAGATTTGTTCAGTATGCAGGGCTTGCCTGGTCTGTAGTTGACCTAGTGCCATCTCTTTTTTCATACATGAGCTTGTGA
>Glyma.19g204500.1.p sequence-type=predicted peptide transcript=Glyma.19g204500.1 locus=Glyma.19g204500 ID=Glyma.19g204500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEGEGAAVWQGAVLGGIIFWLVSASYLNVTRKLRSFLQPWVTHHVVTQTPIILKIQSYGFGFLDALFSGLSCVVSVPFYTAFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDVVSAPRPASPPVKRVTATRDEEDNALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGVSLACMLVFFIGLGRIYLGMHSVVDVLAGLLIGLVVLAFWLTVDEYMDSFVISGQNEFGFGPVTSFWAALSFLLLFAYPTPELPTPSFEYHTAFDGVALGIVSGVQQTYHQFHHANVPRLFSSELTIPVFLGRMLLGIPTILIVKFCSKTLAKWTIPVVANTLGIPIKSTGYIPTLNGSVTGKMSDKLKQGYLQKLLSQHKAFDVDTGIRFVQYAGLAWSVVDLVPSLFSYMSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
