SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g202600

Feature Type:gene_model
Chromosome:Gm19
Start:45941304
stop:45944279
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g202600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06550.1AT JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG2130 KOG Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain JGI N/AIEA
PTHR12480Panther PHOSPHATIDYLSERINE RECEPTOR JGI N/AIEA
PTHR12480:SF5Panther BIFUNCTIONAL ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD6 JGI N/AIEA
PF00646PFAM F-box domain JGI N/AIEA
PF02373PFAM JmjC domain, hydroxylase JGI N/AIEA

Expression Patterns of Glyma.19g202600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g202600
ParalogEvidenceComments
Glyma.03g205200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g202600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g39010 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g202600
>Glyma.19g202600.1 sequence-type=CDS polypeptide=Glyma.19g202600.1.p locus=Glyma.19g202600 ID=Glyma.19g202600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGAGCTTCAGGATGAGAAACTTGTTGTCCCGTGTCAAAAAGAAAACCATCAAAAACAGAAACAGAAGTTGCATTTCCATTACAAAAGAGTTAGCACATCTAGTGGAACAAGAAGAAGAAGAAGAAGAAGTTAATGAAGAAGGTTTCAACATCAAAAGCTCTGCCCCATCACACACTCACGGTGTTCAACCCTTGGGGAATCTCTATCTGAACACAAGTTCCACCAACTCCAGAGACACTGGCTTAGGTAATCTTCACACCCTTTCGGATGAGCTTGTTCTCGACATTCTCGGGTTTTTGGATTCTACTTCCTTAGGGGTTTTAGCCTCTGTGAGCAAGTCTTTCTATGTGTTCACCAACCATGAACCCCTTTGGAGGAATCTCGTGTTGGAGAATCTTCTCGGTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACTTATGTTTCTGCTTGTTACCCTTCATTTGATAACTTCGCTGTTGCTCTTGGGGGTTTCAAAGTTAGAGACTTTTACTCGGATTATCTCTTCCAGAGTTGGCTCTGTGCTAACCTCGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGAGGAATTTCGGTCGAGGAGTTTGTGTTGAATTTTGAAGAGCCTAATAAGCCGGTGCTGTTGGAAGGGTGTATTGATAATTGGGGTGCTTTGAGGAATTGGGATAGGGATTATTTGGTGAGGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGAGTATTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCTGAGAAAGTTCCAAAATTGGGTGATGAATATGAAGTTCCGGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCGGACTACAGGTGGGTTATTATTGGACCTGCTGGGTCTGGATCTTCCTTCCATGTTGATCCGAATTCAACTTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCGCCTGGCGTTCATCCTAGTCCTGATGGTGCGGATGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGCGCCACCAAAAATTGGAACAAGAAACCAATTGAGTGCGTATGTAAAGCTGGAGAGGTGATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAATCTGGAGGAATCTATAGCCATAACCCAAAACTATGTCAGTAGGAGAAATTTGATAAATGTATTGGATTTTTTGAAAAGTCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGACTGAATTTGTACGATAAGTTTAAGAATGCTATCGAGGCTTATTTTCCTGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTCGCGGATACTAATGCGGGAGCTTTCAAGTTCTCTTTCTAG
Predicted protein sequences of Glyma.19g202600
>Glyma.19g202600.1.p sequence-type=predicted peptide transcript=Glyma.19g202600.1 locus=Glyma.19g202600 ID=Glyma.19g202600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRSFRMRNLLSRVKKKTIKNRNRSCISITKELAHLVEQEEEEEEVNEEGFNIKSSAPSHTHGVQPLGNLYLNTSSTNSRDTGLGNLHTLSDELVLDILGFLDSTSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFQYKGSWKSTYVSACYPSFDNFAVALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALRNWDRDYLVRLCGDVKFSVGPVEMKLGEYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWNKKPIECVCKAGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLINVLDFLKSPNASTLVSGTRDRLNLYDKFKNAIEAYFPGEIDELTRKEEERKIQQRKLSFWDSVADTNAGAFKFSF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo