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Report for Sequence Feature Glyma.19g200000

Feature Type:gene_model
Chromosome:Gm19
Start:45701661
stop:45707358
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g200000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11670.1AT UDP-Glycosyltransferase superfamily protein JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0009877GO-bp nodulation EnsemblGenomesN/AIEA
GO:0019375GO-bp galactolipid biosynthetic process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009527GO-cc plastid outer membrane EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009707GO-cc chloroplast outer membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0043661GO-cc peribacteroid membrane EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0035250GO-mf UDP-galactosyltransferase activity EnsemblGenomesN/AIEA
GO:0046481GO-mf digalactosyldiacylglycerol synthase activity EnsemblGenomesN/AIEA
PTHR12526Panther GLYCOSYLTRANSFERASE JGI N/AIEA
PTHR12526:SF202Panther JGI N/AIEA
PF00534PFAM Glycosyl transferases group 1 JGI N/AIEA
PWY-401SoyCyc9 galactolipid biosynthesis I Plant Metabolic Network ISS
GN7V-59989SoyCyc9-rxn digalactosyldiacylglycerol synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.19g200000
LocusGene SymbolProtein Name
DGD1 digalactosyldiacylglycerol synthase 1

Expression Patterns of Glyma.19g200000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g200000
ParalogEvidenceComments
Glyma.03g202100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g200000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g38720 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g200000
>Glyma.19g200000.1 sequence-type=CDS polypeptide=Glyma.19g200000.1.p locus=Glyma.19g200000 ID=Glyma.19g200000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACGCATCCGCAAACTCCAACCTCGTCGAACGCGTTCTCGTTCATCTCCAAGGGCTGGCGCGAGGTTCGCGACTCGGCCGACGCGGATCTCCGTCTGATGCGGGACCGAGCGAACTCGTTCAAGGACCTAGCGACTTCGTTTGATCGCGAGCTCGAGAACTTCTTCAATTCCGCCACGCCGCCGTTCTCCGTGCCGGCGATGCGCTCTCCGCCGCCCAAGGAGATCGAGTTCGTCAAGAGTCTGCGCCCCAAGCTGTCGGAGATTCGGCGCGCGTACTCGTCCCCCGACTTCAGTAAGAAGGTTCTGGAGAAGTGGCGCCCTAGGACGCAGATTAGAATAAACCTTTCCGCGATTAAGAACGCGATTGTGTCGGCGGAGGAGGTGGGGCAGGAGGAGGAGGAGGGGATTGTGGATTTTGAAAAGAGGAGAAGGAGGAGGTTGAGTTTCTGGGAGGAGTGGAAAAACGATGGCGAGGGTGAATCTAGGGATTGGGAACCGATTCGAGTCTTGAAGACGCGGTTCAAGGAGTTTGAGAAGCGTGGTTCGTCTTTTGAGGCGTTCAAGAACAGTGAATTCGTCGAGAAATTCAAGTCTAGCTTGAAATCAATGTGCAAGGAACCTCAGGAGTCAAAGGAAGTGCCGCCATTGGATGTATCTGAACTTCTGGCCTACATTGTAAAACAGTCTGGTCCATTTTTGGACCATCTTGGAGTGAAAAGAGACATATGTGACAAAATAGTAGAAAGCTTGTATAGCAAATGCAAAAACCATCATCTATTGCATACCCTCTCTGGGGAAGAATCTTCTGTTCTAGGGAATGGAAACATAAATGATGAATTGGATTTACGAATAGCAAGTGTCCTTCAGAGCACAGGGCACCGGTATGAAGGTGGATTCTGGACAGACCATGCAAAGCATGTTCCATTGGACAATGAAAGACATGTTGCAATAGTCACAACTGCTAGTCTTCCTTGGATGACAGGAACAGCTGTAAACCCACTATTTCGAGCTGCATATTTATCACAATCTGCTAAGCAGAAAGTCACTCTGCTGGTTCCATGGCTTTGTAAATCAGATCAAGAACTAGTTTATCCCAGCAATGTCACTTTTACTTCGCCAGAAGAACAGGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTCAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGTTTTCGAAAGCAAGACGGAGTATAATACCTGCTGGAGATACTTCTCAATTTATACCATCCAGGGATGCTGACATTGCTATCCTGGAAGAACCAGAACATTTGAATTGGTATCATCATGGTAAGCGTTGGACGGACAAATTCAACCATGTTGTTGGTATTGTCCACACAAATTACTTAGAATACATCAAGAGGGAGAAAAATGGGGCACTCCAAGCATTCTTCGTGAAACACATAAACAACTGGGTTACAAGAGCATACTGCCACAAGGTTCTTCGTCTCTCAGCTGCTACTCAGGATTTACCAAAGTCTGTAATTTGCAATGTTCATGGTGTGAATCCCAAATTCTTGAAAATTGGAGAAAAGATTGCTGCAGAGAGGGAGCTAGGGCAGAAAGCCTTTACAAAAGGGGCGTATTTCTTGGGAAAGATGGTGTGGGCAAAGGGATACAAGGAGTTGATAGATTTATTAGCAAAGCACAAGGCTGACCTTGATGGCTTCAAGTTGGATGTATTTGGAAATGGAGAGGATGCTAATGAAGTACAGAGTGCAGCCAGAAGGTTGGATTTGAATCTCAACTTTCAGAAAGGAAGAGATCATGCAGACGATTCTCTTCACAGGTACAAAGTCTTTATAAATCCCAGCATTAGCGATGTGCTATGCACAGCTACAGCTGAGGCACTTGCCATGGGCAAATTTGTAGTTTGTGCTGATCATCCATCAAATGAGTTCTTCAGGTCATTTCCCAACTGTTTGACTTACAGGACATCCGAAGACTTTGTGACAAAAGTAAAAGAAGCTTTAGAAAATGAGCCTTATCCTCTAACACCTGAGCAAAGATATCAACTTTCTTGGGAGGCTGCTACTCAAAGATTTATGGAATATTCGGAGCTTGACGGAATCCTGAACAAGGAAAATAATGGCGAAAAGTCAAGGGTAGATAAGGGGAAGCTCATTGCTAAGTCAGCATCAATGCCTAATCTGACAGAACTAGTAGATGGAGGCTTAGCATTTGCTCACTATTGTCTCACTGGGAATGAATTTCTGAGATTATGTACAGGAGCAATACCTGGGACACGTGACTACGATAAGCAGCACTGTAAAGACCTTCATCTCTTGCCTCCACAGGTAGAAAATCCTATCTATGGCTGGTGA
Predicted protein sequences of Glyma.19g200000
>Glyma.19g200000.1.p sequence-type=predicted peptide transcript=Glyma.19g200000.1 locus=Glyma.19g200000 ID=Glyma.19g200000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATHPQTPTSSNAFSFISKGWREVRDSADADLRLMRDRANSFKDLATSFDRELENFFNSATPPFSVPAMRSPPPKEIEFVKSLRPKLSEIRRAYSSPDFSKKVLEKWRPRTQIRINLSAIKNAIVSAEEVGQEEEEGIVDFEKRRRRRLSFWEEWKNDGEGESRDWEPIRVLKTRFKEFEKRGSSFEAFKNSEFVEKFKSSLKSMCKEPQESKEVPPLDVSELLAYIVKQSGPFLDHLGVKRDICDKIVESLYSKCKNHHLLHTLSGEESSVLGNGNINDELDLRIASVLQSTGHRYEGGFWTDHAKHVPLDNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSAKQKVTLLVPWLCKSDQELVYPSNVTFTSPEEQEAYIRSWLEERIGFKADFKISFYPGKFSKARRSIIPAGDTSQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKIAAERELGQKAFTKGAYFLGKMVWAKGYKELIDLLAKHKADLDGFKLDVFGNGEDANEVQSAARRLDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYRTSEDFVTKVKEALENEPYPLTPEQRYQLSWEAATQRFMEYSELDGILNKENNGEKSRVDKGKLIAKSASMPNLTELVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGW*






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