Glyma.19g197300

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Report for Sequence Feature Glyma.19g197300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45438949
stop:	45444070
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g197300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06260.1	AT	TLD-domain containing nucleolar protein	JGI	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	EnsemblGenomes	N/A	IEA
KOG2557	KOG	Uncharacterized conserved protein, contains TLDc domain	JGI	N/A	IEA
PTHR23354	Panther	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	JGI	N/A	IEA
PTHR23354:SF41	Panther		JGI	N/A	IEA
PF07534	PFAM	TLD	JGI	N/A	IEA

Expression Patterns of Glyma.19g197300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g197300

Paralog	Evidence	Comments
Glyma.03g199700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g197300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g38410	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g197300

Limit To All Plant Sequences

>Glyma.19g197300.2 sequence-type=transcript locus=Glyma.19g197300 ID=Glyma.19g197300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATTACAGATACATAGATATACCAATACCAATCATCGTGGAAAATTACCCACGGAACAGTGTATTTTCAGAAATCTAGAAACTTGATGATGACGGGGATGGGTATAGCGTGAAAAGGAAAGACGTGCCACGAAACTATACGGAACTGAAATCTCAGTCGAAGCAAGCAATGGGCAACGTTCAGTCACCTCCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCTGTTCATCAATCTGGCAAATCAATCCCAGAGCAACGGGAAATACATCTCTCCCTCCGTTTTTCAGTCATATTTTGGACTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAGGCTAACCTTTGAAGACCTCGTGGATGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTGGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCTATTTTTAACGATATATTATGCATAAAAGGTTCTGAGGATAGATCATGTTCACATCAAGATATTTTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCATGATGAAGGGGGCACTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTTCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGTCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATGCTTGGCATATTGGAGGAGCACTCTCTCACCAAGACCTGGAAGATTGGAACCTTTTGTATCATAGTTCTCTCAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAGGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGGCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAATCTGCAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGCTTTGGGGGACGAGTGAATCACTTGGGTTTGTTTATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGTCTCTCCAAGACTAACCGTATATTGCCTGAAGTAATAGAATGCTGGGGAGTCACACAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGTTAATGTTTATGATGACGACGTGACAAATGTAGGTGGTGGAAGTGGAAGCCCCATGTTAGGTCACGCATGTGGGGACAAAATTGTTAGTTGGATTATGTTAGTTTTTTTTTTTTACCTTTTATTAAGTTATCACAAATTGACCTTTAGTACTCTTCCTTTT

Coding sequences of Glyma.19g197300

Limit To All Plant Sequences

>Glyma.19g197300.1 sequence-type=CDS polypeptide=Glyma.19g197300.1.p locus=Glyma.19g197300 ID=Glyma.19g197300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAACGTTCAGTCACCTCCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCTGTTCATCAATCTGGCAAATCAATCCCAGAGCAACGGGAAATACATCTCTCCCTCCGTTTTTCAGTCATATTTTGGACTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAGGCTAACCTTTGAAGACCTCGTGGATGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTGGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCTATTTTTAACGATATATTATGCATAAAAGGTTCTGAGGATAGATCATGTTCACATCAAGATATTTTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCATGATGAAGGGGGCACTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTTCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGTCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATGCTTGGCATATTGGAGGAGCACTCTCTCACCAAGACCTGGAAGATTGGAACCTTTTGTATCATAGTTCTCTCAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAGGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGGCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAATCTGCAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGCTTTGGGGGACGAGTGAATCACTTGGGTTTGTTTATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGTCTCTCCAAGACTAACCGTATATTGCCTGAAGTAATAGAATGCTGGGGAGTCACACAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA

>Glyma.19g197300.2 sequence-type=CDS polypeptide=Glyma.19g197300.2.p locus=Glyma.19g197300 ID=Glyma.19g197300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAACGTTCAGTCACCTCCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCTGTTCATCAATCTGGCAAATCAATCCCAGAGCAACGGGAAATACATCTCTCCCTCCGTTTTTCAGTCATATTTTGGACTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAGGCTAACCTTTGAAGACCTCGTGGATGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTGGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCTATTTTTAACGATATATTATGCATAAAAGGTTCTGAGGATAGATCATGTTCACATCAAGATATTTTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCATGATGAAGGGGGCACTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTTCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGTCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATGCTTGGCATATTGGAGGAGCACTCTCTCACCAAGACCTGGAAGATTGGAACCTTTTGTATCATAGTTCTCTCAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAGGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGGCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAATCTGCAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGCTTTGGGGGACGAGTGAATCACTTGGGTTTGTTTATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGTCTCTCCAAGACTAACCGTATATTGCCTGAAGTAATAGAATGCTGGGGAGTCACACAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGTTAATGTTTATGATGACGACGTGA

Predicted protein sequences of Glyma.19g197300

Limit To All Plant Sequences

>Glyma.19g197300.1.p sequence-type=predicted peptide transcript=Glyma.19g197300.1 locus=Glyma.19g197300 ID=Glyma.19g197300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNVQSPPNNDPRYVSATRAFTQKELEDLRSLFINLANQSQSNGKYISPSVFQSYFGLHGPLGERMFDLVTQERKDQRLTFEDLVDAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILCIKGSEDRSCSHQDIFNIFLNAANFSKHDEGGTEETMSFEDFRSWCTHLPSVRKLLGSLLLSPDSGRPGYQIPKLLTSKAIDSNIILLRKEYAWHIGGALSHQDLEDWNLLYHSSLNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*

>Glyma.19g197300.2.p sequence-type=predicted peptide transcript=Glyma.19g197300.2 locus=Glyma.19g197300 ID=Glyma.19g197300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNVQSPPNNDPRYVSATRAFTQKELEDLRSLFINLANQSQSNGKYISPSVFQSYFGLHGPLGERMFDLVTQERKDQRLTFEDLVDAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILCIKGSEDRSCSHQDIFNIFLNAANFSKHDEGGTEETMSFEDFRSWCTHLPSVRKLLGSLLLSPDSGRPGYQIPKLLTSKAIDSNIILLRKEYAWHIGGALSHQDLEDWNLLYHSSLNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMLMFMMTT*

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