SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08370.1 | AT | decapping 1 | JGI | N/A | IEA |
| GO:0000290 | GO-bp | deadenylation-dependent decapping of nuclear-transcribed mRNA | EnsemblGenomes | N/A | IEA |
| GO:0031087 | GO-bp | deadenylation-independent decapping of nuclear-transcribed mRNA | EnsemblGenomes | N/A | IEA |
| GO:0043085 | GO-bp | positive regulation of catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0000932 | GO-cc | P-body | EnsemblGenomes | N/A | IEA |
| GO:0003729 | GO-mf | mRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0008047 | GO-mf | enzyme activator activity | EnsemblGenomes | N/A | IEA |
| GO:0030234 | GO-mf | enzyme regulator activity | EnsemblGenomes | N/A | IEA |
| KOG2868 | KOG | Decapping enzyme complex component DCP1 | JGI | N/A | IEA |
| PTHR16290 | Panther | TRANSCRIPTION FACTOR SMIF (DECAPPING ENZYME DCP1) | JGI | N/A | IEA |
| PF06058 | PFAM | Dcp1-like decapping family | JGI | N/A | IEA |
|
Glyma.19g196300 not represented in the dataset |
Glyma.19g196300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g198400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g38280 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g196300.1 sequence-type=CDS polypeptide=Glyma.19g196300.1.p locus=Glyma.19g196300 ID=Glyma.19g196300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCAGACGAAGAAATTGACGCCGAATCTGGATCAGCAGAGCACGAAGGTGCTGAATCTCACGGTGCTCCAGCGAATCGATCCGTTCATCGAAGAGATTCTCTTCACCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGGAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGGAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAGATAACCTAGTGGAGAATCTATTGGATTTTGAGTATGAACTTAAAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGGATACTTAATGCATACCCAAAGACTGCTCCAACTACAGTACTGCCTGTTAACATAAGTGAGTCTGAGGAACTTCAGCCAGTGTCAATTATCCCGGAAAGCCCTCTAGAGTCGTCTTCAGCTACTGCTTCTGCAATTGATGCTGTTGAAGATCCTGCAAATACAAACTTCTTAAGCACATTGAAGGTTACTGGAAATTATGCTTCCAATATGGAAAATTTTAGACAGCATTCTGCAACTGTCACTTCTGCTCCTAGTGGTTTATTCTCTACTGCACCTGCTGTGCAAATTCCATCTGCCTCTCATTCAACTTCATCGATATCAGGCTTCCCTCTTGACTCTCTTGAAACAGCCAAGAGTGGCAATCAAATCATTAATCTTGTTAAGCCTTCCACGTTTTTTGCATCGACGTCTTCATCTTCACTGTTAGTTCCACCTATTTCTTCATCTGTGCAACCTAGTGCAGCTGTTCAACATTCCCTGAATCTGCCACGCCAATATGGCACTCCAGTACTTCAACCCTTCCCTCCCCCTAACCCTCCTCTTTCTCTTACCCCTATTTCAAGCTCCACTCCAAATAGACCTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATTCATGA
>Glyma.19g196300.1.p sequence-type=predicted peptide transcript=Glyma.19g196300.1 locus=Glyma.19g196300 ID=Glyma.19g196300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSQTKKLTPNLDQQSTKVLNLTVLQRIDPFIEEILFTAAHVSFYDFNIESNQWSRKDVEGSLFVVKRNSQPRFQFIVMNRRNTDNLVENLLDFEYELKKPYLLYRNAAQEVNGIWFYNPDECEEVANLFNRILNAYPKTAPTTVLPVNISESEELQPVSIIPESPLESSSATASAIDAVEDPANTNFLSTLKVTGNYASNMENFRQHSATVTSAPSGLFSTAPAVQIPSASHSTSSISGFPLDSLETAKSGNQIINLVKPSTFFASTSSSSLLVPPISSSVQPSAAVQHSLNLPRQYGTPVLQPFPPPNPPLSLTPISSSTPNRPVFSRDNVRDALLSLVQEDQFIDMMFQALLKVSHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
