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Report for Sequence Feature Glyma.19g196300

Feature Type:gene_model
Chromosome:Gm19
Start:45342249
stop:45346031
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g196300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08370.1AT decapping 1 JGI N/AIEA
GO:0000290GO-bp deadenylation-dependent decapping of nuclear-transcribed mRNA EnsemblGenomesN/AIEA
GO:0031087GO-bp deadenylation-independent decapping of nuclear-transcribed mRNA EnsemblGenomesN/AIEA
GO:0043085GO-bp positive regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0000932GO-cc P-body EnsemblGenomesN/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
GO:0008047GO-mf enzyme activator activity EnsemblGenomesN/AIEA
GO:0030234GO-mf enzyme regulator activity EnsemblGenomesN/AIEA
KOG2868 KOG Decapping enzyme complex component DCP1 JGI N/AIEA
PTHR16290Panther TRANSCRIPTION FACTOR SMIF (DECAPPING ENZYME DCP1) JGI N/AIEA
PF06058PFAM Dcp1-like decapping family JGI N/AIEA

Expression Patterns of Glyma.19g196300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g196300
ParalogEvidenceComments
Glyma.03g198400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g196300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g38280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g196300
>Glyma.19g196300.1 sequence-type=CDS polypeptide=Glyma.19g196300.1.p locus=Glyma.19g196300 ID=Glyma.19g196300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCAGACGAAGAAATTGACGCCGAATCTGGATCAGCAGAGCACGAAGGTGCTGAATCTCACGGTGCTCCAGCGAATCGATCCGTTCATCGAAGAGATTCTCTTCACCGCCGCGCATGTCTCCTTCTACGACTTCAACATCGAAAGCAACCAGTGGAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGGAATTCACAACCACGGTTTCAGTTCATCGTCATGAATCGACGGAATACAGATAACCTAGTGGAGAATCTATTGGATTTTGAGTATGAACTTAAAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGGATACTTAATGCATACCCAAAGACTGCTCCAACTACAGTACTGCCTGTTAACATAAGTGAGTCTGAGGAACTTCAGCCAGTGTCAATTATCCCGGAAAGCCCTCTAGAGTCGTCTTCAGCTACTGCTTCTGCAATTGATGCTGTTGAAGATCCTGCAAATACAAACTTCTTAAGCACATTGAAGGTTACTGGAAATTATGCTTCCAATATGGAAAATTTTAGACAGCATTCTGCAACTGTCACTTCTGCTCCTAGTGGTTTATTCTCTACTGCACCTGCTGTGCAAATTCCATCTGCCTCTCATTCAACTTCATCGATATCAGGCTTCCCTCTTGACTCTCTTGAAACAGCCAAGAGTGGCAATCAAATCATTAATCTTGTTAAGCCTTCCACGTTTTTTGCATCGACGTCTTCATCTTCACTGTTAGTTCCACCTATTTCTTCATCTGTGCAACCTAGTGCAGCTGTTCAACATTCCCTGAATCTGCCACGCCAATATGGCACTCCAGTACTTCAACCCTTCCCTCCCCCTAACCCTCCTCTTTCTCTTACCCCTATTTCAAGCTCCACTCCAAATAGACCTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATTCATGA
Predicted protein sequences of Glyma.19g196300
>Glyma.19g196300.1.p sequence-type=predicted peptide transcript=Glyma.19g196300.1 locus=Glyma.19g196300 ID=Glyma.19g196300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSQTKKLTPNLDQQSTKVLNLTVLQRIDPFIEEILFTAAHVSFYDFNIESNQWSRKDVEGSLFVVKRNSQPRFQFIVMNRRNTDNLVENLLDFEYELKKPYLLYRNAAQEVNGIWFYNPDECEEVANLFNRILNAYPKTAPTTVLPVNISESEELQPVSIIPESPLESSSATASAIDAVEDPANTNFLSTLKVTGNYASNMENFRQHSATVTSAPSGLFSTAPAVQIPSASHSTSSISGFPLDSLETAKSGNQIINLVKPSTFFASTSSSSLLVPPISSSVQPSAAVQHSLNLPRQYGTPVLQPFPPPNPPLSLTPISSSTPNRPVFSRDNVRDALLSLVQEDQFIDMMFQALLKVSHS*






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