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Report for Sequence Feature Glyma.19g195800

Feature Type:gene_model
Chromosome:Gm19
Start:45294380
stop:45296644
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g195800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44350.2AT NAC domain containing protein 61 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF02365PFAM No apical meristem (NAM) protein JGI N/AIEA

Proteins Associated with Glyma.19g195800
LocusGene SymbolProtein Name
NAC183 NAC Transcription Factor gene 183

Expression Patterns of Glyma.19g195800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g195800 not represented in the dataset
Glyma.19g195800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g195800
ParalogEvidenceComments
Glyma.03g197900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g195800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g38211 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g195800
>Glyma.19g195800.2 sequence-type=transcript locus=Glyma.19g195800 ID=Glyma.19g195800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTCTTTTAGTACCTTTGCCTAACTTTTTCAGTCATTGATTCTCCGAAGCCACTAGCACTTGATGATCTATATAGTATATAAATACATCACGATCGTGTAGTTCATGAGAATTGGTCTTCACCAATAACGAAGAAAAATTTCTCCTTGTTTGTACGGCACACAAGTGAGATCAAAGATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCACAACAAGCTTGAAGGAGAAAGGGAAGACATGAATCGAGTTATTCCAGTCGTTGATATATACGACTACAACCCATCTGAACTCCCACGTAAAAATCTtatatatatatatatatatacatatatatTTCCCTCATCTCCCTCtttctcttttcatttttctaatttttttttcctttCAATCAAAATCGAGCTTGACTTGAAAGCTATGGTACAAGTTGATTTATTGCATATATATAGAAGCAAAGCACATTCTGGATAATTTAAGAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGATGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGAACACATCCAATCCAATCTATCTGTGCTTTGTTGGTATGCTACAACAAAGTTGACTCTCAAGTCTCAGCTACACCGATGACTGAATAAGTAGTAGGTTATGTTAATTAATTGTGTATGTCGCACCGCATGCAGAACAACTACTTTAAATATTTGTTAGATTTCTTGCTAGCTTTATAAAGTTGTGTATAGTGGCTAATTTGTCTGATAAATTATCACAAAGTCTTCATCTTGTGATCTATGGTACCAATATCTCCCCGTCTTCATGCAAATCCTTAGGAATCAAAGATTTGAACAAATTC
Coding sequences of Glyma.19g195800
>Glyma.19g195800.1 sequence-type=CDS polypeptide=Glyma.19g195800.1.p locus=Glyma.19g195800 ID=Glyma.19g195800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCACAACAAGCTTGAAGGAGAAAGGGAAGACATGAATCGAGTTATTCCAGTCGTTGATATATACGACTACAACCCATCTGAACTCCCACAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGATGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGA

>Glyma.19g195800.2 sequence-type=CDS polypeptide=Glyma.19g195800.2.p locus=Glyma.19g195800 ID=Glyma.19g195800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGACACGGAGCAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCAACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATCGGAATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACTGCCATCAAAACATCATCCTCTAGTCCCACGCTAAGGAAGGAATTCAATTTATGCAGAGTGTACAAAAAATCAAAGTGTTTGACAGCATTTGATAGACGACCACCGCCAAGGAGGGACACAGAAAGCTATTCGGGTGCTCAAAATGTAGAAGAGCAACAAAAGGGTTCAACATCATATGATGATTATCATCATAAAATGGTGGAGAGAAGTGCAACGTGTTCACCAGCAGAGAGCTCTTCCTCCGGAGACCATGACCAACCCCCTCTTCACGGTGAGGAAGCTACTCAAATGGATGTTGACAACAACGATGACCCTTTTTTGGATTGGGAGAAAGTGGATATGTTCTTGGGATCAGAACCATGA
Predicted protein sequences of Glyma.19g195800
>Glyma.19g195800.1.p sequence-type=predicted peptide transcript=Glyma.19g195800.1 locus=Glyma.19g195800 ID=Glyma.19g195800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSELPQISGEASMRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKTSSSSPTLRKEFNLCRVYKKSKCLTAFDRRPPPRRDTESYSGAQNVEEQQKGSTSYDDYHHKMVERSATCSPAESSSSGDHDQPPLHGEEATQMDVDNNDDPFLDWEKVDMFLGSEP*

>Glyma.19g195800.2.p sequence-type=predicted peptide transcript=Glyma.19g195800.2 locus=Glyma.19g195800 ID=Glyma.19g195800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKTSSSSPTLRKEFNLCRVYKKSKCLTAFDRRPPPRRDTESYSGAQNVEEQQKGSTSYDDYHHKMVERSATCSPAESSSSGDHDQPPLHGEEATQMDVDNNDDPFLDWEKVDMFLGSEP*






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