SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g193900

Feature Type:gene_model
Chromosome:Gm19
Start:45144855
stop:45148565
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g193900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52820.1AT purple acid phosphatase 22 JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0003993GO-mf acid phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1378 KOG Purple acid phosphatase JGI N/AIEA
PTHR22953Panther ACID PHOSPHATASE RELATED JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA
PWY-6348SoyCyc9 phosphate acquisition Plant Metabolic Network ISS
GN7V-52395SoyCyc9-rxn acid phosphatase Plant Metabolic Network ISS

Proteins Associated with Glyma.19g193900
LocusGene SymbolProtein Name
PAP22 purple acid phosphatase 22-like

Expression Patterns of Glyma.19g193900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g193900
ParalogEvidenceComments
Glyma.03g194100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g193900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g37850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g193900
>Glyma.19g193900.1 sequence-type=CDS polypeptide=Glyma.19g193900.1.p locus=Glyma.19g193900 ID=Glyma.19g193900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCATCTCATTCTGTGTACCTTCCACAACCCCACTATATAACAGACCCTCCATATTCAAAATGGTGCCTTTCACTCCCAGCAACAAATTGCAACAATCAACAAGTAGTCCAACCCGAATAAACATGATGGGAAAATGTAGTAAGTCCCTTATGGCGTTCCCAATCCTCCTCCTACGCACCCTATGCTTCCTTTTGTTCTCACAACCCCTCCTTTCTCAGGAGAACAATTTTGTTCGTCAGCCAGCTGCTCAACTCATCATCACTCCCCACCATCGCTCCCATTCAGACCCCCAACAGGTACACATTTCTTTGGTGGGCCAAGAGAAGATGAGGGTGTCGTGGATAACCGAAGACAAGCACGCAGAATCTGTGGTGGAGTACGGAACAAAGGCAGGGGAATATAGCGCAAAAGCAACGGGGGTGTACACCTCGTACCAATATTTTTTCTATAACTCCGGCAAGATTCACAACGTTGTAATTGGGCCATTGCAGCCTGGTTCGACTTACTTCTACAGGTGCGGAGGGTCAGGTCCTGAGTTTTCCTTCAAGACACCACCACCCAGGTGTCCCATTGAATTTGTCATCGTTGGTGACTTGGGACAAACAGAATGGACTGCATCAACCTTAAAACACATTGATAGCAGCGACTATGATGTGTTCTTGTTACCAGGAGACCTATCCTATGCCGATTCCCAACAACCTTTGTGGGACTCTTTTGGTCGTTTGGTGGAGCCATATGCTAGTAAAAGGCCATGGATGGTTACCGAAGGCAACCACGAGATTGAGATTTTCCCTATTATCTACCCACAAGGCTTCCAAGCCTACAACGCTCGCTGGCCCATGCCCTTCCAACAAAGTGGTTCCACCTCAAACCTCTATTACTCCTTCGAGGTTGCCGGCACCCACGTCATCATGCTAGGTTCCTACACTGATTTTGACTCCCAATCACTTCAGTACACGTGGCTTCAATCTGACCTCGCCAACATTGATAGGGTCAAGACACCTTGGGTGATTGTGTTGCTGCATGCACCTTGGTATAATACTAATGAGGCACACCAAGGTGAAGGTGAATCCATGAGACAAGCCATGGAGGAGTTGCTTTATGAGGCACGCGTTGACTTGGTTTTTGCTGGCCATGTTCATGCATATGAACGCTTCACTCGAATTTACGACAATAAGGCTGATTCGTGTGGACCAATGTACGTGACAATTGGTGACGGAGGAAACAGGGAAGGTCTTGCGTTAATGTTTAAGAACCCTTCAAGCCCGCTCTCATTGTATCGAGAGCCAAGCTTTGGACATGGAAGGTTGCGAATACTAAATGAAACACATGCACATTGGTCATGGCACCGAAACAATGATGCTGATGCGGTTGTAGCTGATGGTGTTTGGATAGAGAGTTTAAGCAGCTCGAAAGCATGCTCGAAGACACCATACCAACAATATGCTGCTAACGAAGAGCTATAA
Predicted protein sequences of Glyma.19g193900
>Glyma.19g193900.1.p sequence-type=predicted peptide transcript=Glyma.19g193900.1 locus=Glyma.19g193900 ID=Glyma.19g193900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSISFCVPSTTPLYNRPSIFKMVPFTPSNKLQQSTSSPTRINMMGKCSKSLMAFPILLLRTLCFLLFSQPLLSQENNFVRQPAAQLIITPHHRSHSDPQQVHISLVGQEKMRVSWITEDKHAESVVEYGTKAGEYSAKATGVYTSYQYFFYNSGKIHNVVIGPLQPGSTYFYRCGGSGPEFSFKTPPPRCPIEFVIVGDLGQTEWTASTLKHIDSSDYDVFLLPGDLSYADSQQPLWDSFGRLVEPYASKRPWMVTEGNHEIEIFPIIYPQGFQAYNARWPMPFQQSGSTSNLYYSFEVAGTHVIMLGSYTDFDSQSLQYTWLQSDLANIDRVKTPWVIVLLHAPWYNTNEAHQGEGESMRQAMEELLYEARVDLVFAGHVHAYERFTRIYDNKADSCGPMYVTIGDGGNREGLALMFKNPSSPLSLYREPSFGHGRLRILNETHAHWSWHRNNDADAVVADGVWIESLSSSKACSKTPYQQYAANEEL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo