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Report for Sequence Feature Glyma.19g192700

Feature Type:gene_model
Chromosome:Gm19
Start:45041964
stop:45045975
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g192700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52910.1AT growth-regulating factor 4 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0032502GO-bp developmental process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides JGI N/AIEA
PF08879PFAM WRC JGI N/AIEA
PF08880PFAM QLQ JGI N/AIEA

Proteins Associated with Glyma.19g192700
LocusGene SymbolProtein Name
GRF20 growth-regulating factor

Expression Patterns of Glyma.19g192700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g192700
ParalogEvidenceComments
Glyma.03g192200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g192700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g37740 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g192700
>Glyma.19g192700.2 sequence-type=transcript locus=Glyma.19g192700 ID=Glyma.19g192700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttcttttttTCTCTCACCTCAGTCACCTGTCTTGTCTCACTGTCTTTTTCTCAAGTGCTCTTAACCCTTCCCCCACTGCCTTCGAAACAAACTTTGCAGGCTTTGCTGTCAGAAACAAACAACCctctctctctctctctccctctccaccaccctctattttctctctcCAACACAGGTAGGTATCTGCCAAAGATATAAAGGAACCCGCAGAGGACACTGCTAAAGCTTTTTACAAACTTGGTCTTTACACGTCCAACACACCTAACGAAGTTAATTAGCCACCACACTCACACACTAAGCCAAACTTAATACTAGTAAGTAGCAAGtctctctctctctctctctctctctctctctctctctcCATGGACTTCCATCTGAAGGAATGGAGAAACCAGCATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCATCAACAGCCATCTGCCACTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTGAAACTGAAACAATGACCACTACAACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTAATAATTGTGATGGTGGATCTCTAGGACTAGGTGCTTCTTCATCTTCCATTTCTTCACCACCCCTAGCTTCTGCTTCACTCAAATCCCCATTTGATCTTCTTCGTCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGACCATGTGGGTGGGGATGGCAGATCAGGTGGAGGGGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTGCTGGCCCTAGCCTCTCTATTTCAATGCCCGGAAATGCTGCTGCTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCAGGCCCAAGAAATGAGAATGTGGGCCTCGTGGCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCCATGGGAGGACCACTGGCCGAGGCACTCAGATCATCTATTTCAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGGATCTGAGACCAGCATTATTAGCACCTGAACTTAGTTTGTAGGTGCCCCCAATTAATTTTCTCTTTTTTGTTTTGAGGTTAAGTTCCACTTTTAGAGCATTCTTGGACAACGGTTATGTTCATATCAAACCTCTGGACTACTTTTGTTTCTAAGTGGGCGATGAAAGGATATGGTCGGTTCCTGGTTGCATTTAATTCGTAATACTGGGTTTTGCCCATTAACAACACATTCTTTATGGCATTACTTACGCTAGGTAAATCACTCCAGTTCCTAAAATTTCCGCGAAATGATTACTAGTTAGTCAAACGACTTAA
Coding sequences of Glyma.19g192700
>Glyma.19g192700.1 sequence-type=CDS polypeptide=Glyma.19g192700.1.p locus=Glyma.19g192700 ID=Glyma.19g192700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACTTCCATCTGAAGGAATGGAGAAACCAGCATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCATCAACAGCCATCTGCCACTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTGAAACTGAAACAATGACCACTACAACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTAATAATTGTGATGGTGGATCTCTAGGACTAGGTGCTTCTTCATCTTCCATTTCTTCACCACCCCTAGCTTCTGCTTCACTCAAATCCCCATTTGATCTTCTTCGTCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGACCATGTGGGTGGGGATGGCAGATCAGGTGGAGGGGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTGCTGGCCCTAGCCTCTCTATTTCAATGCCCGGAAATGCTGCTGCTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCAGGCCCAAGAAATGAGAATGTGGGCCTCGTGGCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCCATGGGAGGACCACTGGCCGAGGCACTCAGATCATCTATTTCAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGGATCTGAGACCAGCATTATTAGCACCTGA

>Glyma.19g192700.2 sequence-type=CDS polypeptide=Glyma.19g192700.2.p locus=Glyma.19g192700 ID=Glyma.19g192700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACTTCCATCTGAAGGAATGGAGAAACCAGCATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCATCAACAGCCATCTGCCACTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTGAAACTGAAACAATGACCACTACAACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTAATAATTGTGATGGTGGATCTCTAGGACTAGGTGCTTCTTCATCTTCCATTTCTTCACCACCCCTAGCTTCTGCTTCACTCAAATCCCCATTTGATCTTCTTCGTCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGACCATGTGGGTGGGGATGGCAGATCAGGTGGAGGGGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTGCTGGCCCTAGCCTCTCTATTTCAATGCCCGGAAATGCTGCTGCTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCAGGCCCAAGAAATGAGAATGTGGGCCTCGTGGCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCCATGGGAGGACCACTGGCCGAGGCACTCAGATCATCTATTTCAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGGATCTGAGACCAGCATTATTAGCACCTGA
Predicted protein sequences of Glyma.19g192700
>Glyma.19g192700.1.p sequence-type=predicted peptide transcript=Glyma.19g192700.1 locus=Glyma.19g192700 ID=Glyma.19g192700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFHLKEWRNQHESEEQQHSTKMPKLLPESHHQQPSATALPLFVPEPNSSSKVSTLSDSTLAAETETMTTTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPAALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSANNCDGGSLGLGASSSSISSPPLASASLKSPFDLLRLNERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAGPSLSISMPGNAAAASSDVSLKLSTGYGEDPGPRNENVGLVAEQLQLNWAGGWASSNQVASMGGPLAEALRSSISTSSPTSVLHHLPRGSGSETSIIST*

>Glyma.19g192700.2.p sequence-type=predicted peptide transcript=Glyma.19g192700.2 locus=Glyma.19g192700 ID=Glyma.19g192700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFHLKEWRNQHESEEQQHSTKMPKLLPESHHQQPSATALPLFVPEPNSSSKVSTLSDSTLAAETETMTTTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPAALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSANNCDGGSLGLGASSSSISSPPLASASLKSPFDLLRLNERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAGPSLSISMPGNAAAASSDVSLKLSTGYGEDPGPRNENVGLVAEQLQLNWAGGWASSNQVASMGGPLAEALRSSISTSSPTSVLHHLPRGSGSETSIIST*






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