Glyma.19g191000

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Report for Sequence Feature Glyma.19g191000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44845899
stop:	44856297
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g191000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03740.1	AT	histone deacetylase 2C	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA

Proteins Associated with Glyma.19g191000

Locus	Gene Symbol	Protein Name
	HDT6	histone deacetylase HDT1-like

Expression Patterns of Glyma.19g191000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g191000

Paralog	Evidence	Comments
Glyma.03g190700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g191000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g37540	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g191000

Limit To All Plant Sequences

>Glyma.19g191000.2 sequence-type=transcript locus=Glyma.19g191000 ID=Glyma.19g191000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTAAATACTCGAAAGTGTTCCGTTTTTCTGGAAACTTTTTTTCTTCTCTCAACTCTCTCTCTCTGCGTCCATGGAGTTTTGGGGTGTTGAGGTGAAAAATGGAGAATCTCTCAAGGTTGATCCAGGAGATGACAAGATTATCCACCTTTCAAATGCATGCATGGGGGATGTCACTAAGGATATAGGAGGTGGACCAGTAGCCCTGTATGTGAAGTTTGGTAACCAGAAGTTTGTACTTGGAACACTTTCTTCTGATAAATTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAATATGGAAGTGTCTTCTTTACTGGATTTAAAGCTCAACCTCAGTCGGAGTCtgatgatgatgaagattctgatgATATTGATGAAGATATTCCAGTTAGTGCAGTCAATGGTAAACCCGAGGTTGGCGTCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAGATCCAAGAAAGAGGGATGCAAATGGTGAAGATGACGATTCATCCGAATCTGATTCTGATGATGATTCAAGTGAAGATAAGCCCACAGCGAATGGCGACATAGAAAGTAGtgaaggtgatgatgatagcgatgatgatgaggaggaggagggggatgatgaatctgatgaggaGACAGCCAAGAAGATTGAAGCAAGCAATAAGAGGGGTATTGAGTCTTCTAAGAAAACACCTGTTCCTGTGAAGAAGACAAAGTTTGTTACTCCTCAAAAGACTGATAGCAAGAATGTTGTCCATGCTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGCAACTGCAAATAACAAGCTGCAGTCTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTTATTTAAGACAGAAGATGCCTTAAGTTCTCATAACAAGGCCAAGCACAGTGCTAAGTGAAGTCTTGCTTTTTTGCCTGAGCAGTGACAGTGAATGTTGGTGTTTCTGGTGTTGGATGATAGTAAAAAAACAGTGTAGTTGATGTAGGAAAGCTGGTCTAGTGATTTTGGTATTCAACTTGGGTTTGTGCTAACTGGTCTTTGACCTTGACCTTGATCCCATGTCGGCCTTCTTTCAACCGAATCTGTGATGAAATGCGTAAATACTCCGTACAACTCATGAAATGGTATTCCTGACAAAAGTAAGTTGGTATTTAACGTTGCTAAGCCATCAACCAATGTTTCTAATTATTATTTGGATGGAGGGTATTTTTATTTTTTTATCACTTTCGTTCGTATATTTCC

Coding sequences of Glyma.19g191000

Limit To All Plant Sequences

>Glyma.19g191000.1 sequence-type=CDS polypeptide=Glyma.19g191000.1.p locus=Glyma.19g191000 ID=Glyma.19g191000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTTTGGGGTGTTGAGGTGAAAAATGGAGAATCTCTCAAGGTTGATCCAGGAGATGACAAGATTATCCACCTTTCAAATGCATGCATGGGGGATGTCACTAAGGATATAGGAGGTGGACCAGTAGCCCTGTATGTGAAGTTTGGTAACCAGAAGTTTGTACTTGGAACACTTTCTTCTGATAAATTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAATATGGAAGTGTCTTCTTTACTGGATTTAAAGCTCAACCTCAGTCGGAGTCTGATGATGATGAAGATTCTGATGATATTGATGAAGATATTCCAGTTAGTGCAGTCAATGGTAAACCCGAGGTTGGCGTCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAGATCCAAGAAAGAGGGATGCAAATGGTGAAGATGACGATTCATCCGAATCTGATTCTGATGATGATTCAAGTGAAGATAAGCCCACAGCGAATGGCGACATAGAAAGTAGTGAAGGTGATGATGATAGCGATGATGATGAGGAGGAGGAGGGGGATGATGAATCTGATGAGGAGACAGCCAAGAAGATTGAAGCAAGCAATAAGAGGGGTATTGAGTCTTCTAAGAAAACACCTGTTCCTGTGAAGAAGACAAAGTTTGTTACTCCTCAAAAGACTGATAGCAAGAATGTTGTCCATGCTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGCAACTGCAAATAACAAGCTGCAGTCTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTTATTTAAGACAGAAGATGCCTTAAGTTCTCATAACAAGGCCAAGCACAGTGCTAAGTGA

>Glyma.19g191000.2 sequence-type=CDS polypeptide=Glyma.19g191000.2.p locus=Glyma.19g191000 ID=Glyma.19g191000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTTTGGGGTGTTGAGGTGAAAAATGGAGAATCTCTCAAGGTTGATCCAGGAGATGACAAGATTATCCACCTTTCAAATGCATGCATGGGGGATGTCACTAAGGATATAGGAGGTGGACCAGTAGCCCTGTATGTGAAGTTTGGTAACCAGAAGTTTGTACTTGGAACACTTTCTTCTGATAAATTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAATATGGAAGTGTCTTCTTTACTGGATTTAAAGCTCAACCTCAGTCGGAGTCTGATGATGATGAAGATTCTGATGATATTGATGAAGATATTCCAGTTAGTGCAGTCAATGGTAAACCCGAGGTTGGCGTCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAGATCCAAGAAAGAGGGATGCAAATGGTGAAGATGACGATTCATCCGAATCTGATTCTGATGATGATTCAAGTGAAGATAAGCCCACAGCGAATGGCGACATAGAAAGTAGTGAAGGTGATGATGATAGCGATGATGATGAGGAGGAGGAGGGGGATGATGAATCTGATGAGGAGACAGCCAAGAAGATTGAAGCAAGCAATAAGAGGGGTATTGAGTCTTCTAAGAAAACACCTGTTCCTGTGAAGAAGACAAAGTTTGTTACTCCTCAAAAGACTGATAGCAAGAATGTTGTCCATGCTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGCAACTGCAAATAACAAGCTGCAGTCTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTTATTTAAGACAGAAGATGCCTTAAGTTCTCATAACAAGGCCAAGCACAGTGCTAAGTGA

Predicted protein sequences of Glyma.19g191000

Limit To All Plant Sequences

>Glyma.19g191000.1.p sequence-type=predicted peptide transcript=Glyma.19g191000.1 locus=Glyma.19g191000 ID=Glyma.19g191000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFWGVEVKNGESLKVDPGDDKIIHLSNACMGDVTKDIGGGPVALYVKFGNQKFVLGTLSSDKFPQISYDLVFEKEFELSHNWKYGSVFFTGFKAQPQSESDDDEDSDDIDEDIPVSAVNGKPEVGVKPDANEAKQKKIADPRKRDANGEDDDSSESDSDDDSSEDKPTANGDIESSEGDDDSDDDEEEEGDDESDEETAKKIEASNKRGIESSKKTPVPVKKTKFVTPQKTDSKNVVHAATPHPSKQAGKATANNKLQSPKSGGDYSCKPCNRLFKTEDALSSHNKAKHSAK*

>Glyma.19g191000.2.p sequence-type=predicted peptide transcript=Glyma.19g191000.2 locus=Glyma.19g191000 ID=Glyma.19g191000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFWGVEVKNGESLKVDPGDDKIIHLSNACMGDVTKDIGGGPVALYVKFGNQKFVLGTLSSDKFPQISYDLVFEKEFELSHNWKYGSVFFTGFKAQPQSESDDDEDSDDIDEDIPVSAVNGKPEVGVKPDANEAKQKKIADPRKRDANGEDDDSSESDSDDDSSEDKPTANGDIESSEGDDDSDDDEEEEGDDESDEETAKKIEASNKRGIESSKKTPVPVKKTKFVTPQKTDSKNVVHAATPHPSKQAGKATANNKLQSPKSGGDYSCKPCNRLFKTEDALSSHNKAKHSAK*

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