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Report for Sequence Feature Glyma.19g189600

Feature Type:gene_model
Chromosome:Gm19
Start:44744021
stop:44746094
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g189600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36620.1AT ribosomal protein L24 JGI N/AIEA
AT3G53020.1AT Ribosomal protein L24e family protein JGI N/AIEA
GO:0000027GO-bp ribosomal large subunit assembly EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:1902626GO-bp assembly of large subunit precursor of preribosome EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG1722 KOG 60s ribosomal protein L24 JGI N/AIEA
PTHR10792Panther 60S RIBOSOMAL PROTEIN L24 JGI N/AIEA
PF01246PFAM Ribosomal protein L24e JGI N/AIEA

Expression Patterns of Glyma.19g189600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g189600
ParalogEvidenceComments
Glyma.03g189300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g189600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g37370 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g189600
>Glyma.19g189600.2 sequence-type=transcript locus=Glyma.19g189600 ID=Glyma.19g189600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCCCAAATAAAAACACATGGACACGTAAAGTCTTTGGGCCCAGGAGTGCACTTATGTGGTTTTATATTCGGGGTATAGATAGCGAGGAATAAGGATCAGCAGGGAGAATTAGGTTTTTAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAAAGGACATTGCTCAAGAAGCTGTGAGGAAGAGGAGACGTGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCGACCTTGGAAGTAATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGGTGTGTTTTCATTTTATTTGTTTCTGCCTACTTTTGTATTTGCATTTTTGGATTTGTTATAGATGTGTACATAATCACATTCTCAGCCATTTATTTTCTTATCAACTGTTATAGTTGAATTTTATTCTCCAAGTTTATATTTCTCACTTTAGAAGAGCTAAATTCTGTTTTTTTTTTAAAACTTCTATCATTCTATCATGTTCGTATATATTTTACCTTGTGTAAAATTTTATTTGTTTCAGCGCTTTATTTTTAACAGCTCTACTTATTACATATTTATCGGAATCTATGATGTGGTGCAGTGAAATTAAGGAGAGGATCAAGAAAACAAAGGATGAGAAGAAGGCTAAGAAAGCAGAAGTTGCTTCCAAGTCGCAAAAAGCAGGAGGGAAAGGCAATGTTTCTAAGGGTGCTATGCCCAAAGGTCCCAAACTTGGCGGTGGAGGCGGGAAACGCTGAGCTTTTAGTTTTGTTCCTAATTTTGGCTACAATTTAAATAGTTGTTTTGACACTGCTGTACTGATATTTCATTTGGAAGATTAATCTTTTATTTTACTGTTTTACTAAACCTGTGTTTGGATATTCAGAAGGTACTTGGTTATTGAATGGATTTCGCAATCTGTGCTAGTTTTATATTCTTTTTACGCC
Coding sequences of Glyma.19g189600
>Glyma.19g189600.1 sequence-type=CDS polypeptide=Glyma.19g189600.1.p locus=Glyma.19g189600 ID=Glyma.19g189600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCTCAAAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAAAGGACATTGCTCAAGAAGCTGTGAGGAAGAGGAGACGTGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCGACCTTGGAAGTAATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGTGAAATTAAGGAGAGGATCAAGAAAACAAAGGATGAGAAGAAGGCTAAGAAAGCAGAAGTTGCTTCCAAGTCGCAAAAAGCAGGAGGGAAAGGCAATGTTTCTAAGGGTGCTATGCCCAAAGGTCCCAAACTTGGCGGTGGAGGCGGGAAACGCTGA

>Glyma.19g189600.2 sequence-type=CDS polypeptide=Glyma.19g189600.2.p locus=Glyma.19g189600 ID=Glyma.19g189600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCTCAAAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAAAGGACATTGCTCAAGAAGCTGTGAGGAAGAGGAGACGTGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCGACCTTGGAAGTAATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGGTGTGTTTTCATTTTATTTGTTTCTGCCTACTTTTGTATTTGCATTTTTGGATTTGTTATAGATGTGTACATAATCACATTCTCAGCCATTTATTTTCTTATCAACTGTTATAGTTGA
Predicted protein sequences of Glyma.19g189600
>Glyma.19g189600.1.p sequence-type=predicted peptide transcript=Glyma.19g189600.1 locus=Glyma.19g189600 ID=Glyma.19g189600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVRKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKSQKAGGKGNVSKGAMPKGPKLGGGGGKR*

>Glyma.19g189600.2.p sequence-type=predicted peptide transcript=Glyma.19g189600.2 locus=Glyma.19g189600 ID=Glyma.19g189600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVRKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALRCVFILFVSAYFCICIFGFVIDVYIITFSAIYFLINCYS*






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