SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g188700

Feature Type:gene_model
Chromosome:Gm19
Start:45115108
stop:45120164
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.19g188700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36660.1AT PAB7 JGI N/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
K13126KEGG Spliceosome JGI N/AIEA
KOG0123 KOG Polyadenylate-binding protein (RRM superfamily) JGI N/AIEA
PTHR24012PantherFam RNA BINDING PROTEIN JGI N/AIEA
PTHR24012:SF455PantherFam POLYADENYLATE-BINDING PROTEIN 7 JGI N/AIEA
PF00076Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA
PF00658Pfam Poly-adenylate binding protein, unique domain JGI N/AIEA

Gene model name correspondences to Glyma.19g188700 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g37270 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g188700
>Glyma.19g188700.1 sequence-type=CDS polypeptide=Glyma.19g188700.1.p locus=Glyma.19g188700 id=Glyma.19g188700.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGGTTCATCCGTCGGTCGCCGCCGCTCCGGCGTCGCTCTATGTCGGCGACCTCCACCCCGACGTCTCCGACAGCCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCGCGTCTGTTCGCGTCTGCAAAGACTCCTCCACGGGGAAATCCCTCTGTTACGGTTACCTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAACTCCACGCTTAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAAAGCGCTATAGGGAACTTGTTTGTTAAGAACTTACCCGAATCGATAGATAATGCTGGACTGCAAGATATCTTCAAAAAATACGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATCTTCGAAAGTTGCTATCGAGAAGCTGAATGGCTATACTGTTGCTGATAAGGAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATGTTTCAGAAGCAACACTGCAGGAGAAGTTTTCCTCTTTCGGGAAAATTGTTAGCTTGGTTATTGCAAAGGACAACAATGGAATGTCCAAGGGCTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAACGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCAGAAGGAACAAATCTTGAAATACAAGGGATCGAACATTTATGTGAAGAACATTGATGACCATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAATTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACATTTCATGGATTCATGTATCATGGAAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAACAACTGGCACGACTATCTGGACCTTCGACTGCCATTATCCCTAGTGGATATCCTCCTTACTACTATGCAGCTAGTGGCGTTATTTCACACGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGACCGGGATGGGGGGCTAATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGGAATTCAATAGCACAGGGAAATACTCACTCTGGTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGAGATTCAAGTACTCAGCAGAGAACCGGACAGGCTAGGTACATACCTAGTGGACGCCAGCGTGATGTGGAAAAAGGATCTGGATCCTCATCTGTTGGTTCAAACTCTGGCAGAGGAGGATCCCAGGGGTCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATTCTCGGGGAGCATCTTTACATGCTTGTTCATAAACTAAAGCCTACCCTAGCAGCAAAAATAACAGGGATGCTTCTGGAGATGGACAATGGAGAATTACTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA

>Glyma.19g188700.3 sequence-type=CDS polypeptide=Glyma.19g188700.3.p locus=Glyma.19g188700 id=Glyma.19g188700.3.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGGTTCATCCGTCGGTCGCCGCCGCTCCGGCGTCGCTCTATGTCGGCGACCTCCACCCCGACGTCTCCGACAGCCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCGCGTCTGTTCGCGTCTGCAAAGACTCCTCCACGGGGAAATCCCTCTGTTACGGTTACCTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAACTCCACGCTTAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAAAGCGCTATAGGGAACTTGTTTGTTAAGAACTTACCCGAATCGATAGATAATGCTGGACTGCAAGATATCTTCAAAAAATACGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATCTTCGAAAGTTGCTATCGAGAAGCTGAATGGCTATACTGTTGCTGATAAGGAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATGTTTCAGAAGCAACACTGCAGGAGAAGTTTTCCTCTTTCGGGAAAATTGTTAGCTTGGTTATTGCAAAGGACAACAATGGAATGTCCAAGGGCTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAACGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCAGAAGGAACAAATCTTGAAATACAAGGGATCGAACATTTATGTGAAGAACATTGATGACCATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAATTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACATTTCATGGATTCATGTATCATGGAAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAACAACTGGCACGACTATCTGGACCTTCGACTGCCATTATCCCTAGTGGATATCCTCCTTACTACTATGCAGCTAGTGGCGTTATTTCACACGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGACCGGGATGGGGGGCTAATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGGAATTCAATAGCACAGGGAAATACTCACTCTGGTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGAGATTCAAGTACTCAGCAGGCTAGGTACATACCTAGTGGACGCCAGCGTGATGTGGAAAAAGGATCTGGATCCTCATCTGTTGGTTCAAACTCTGGCAGAGGAGGATCCCAGGGGTCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATTCTCGGGGAGCATCTTTACATGCTTGTTCATAAACTAAAGCCTACCCTAGCAGCAAAAATAACAGGGATGCTTCTGGAGATGGACAATGGAGAATTACTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA
Predicted protein sequences of Glyma.19g188700
>Glyma.19g188700.1.p sequence-type=predicted peptide transcript=Glyma.19g188700.1 locus=Glyma.19g188700 id=Glyma.19g188700.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAVHPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAASGVISHVPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTHSGTYLPQAQQISQPVISSRDSSTQQRTGQARYIPSGRQRDVEKGSGSSSVGSNSGRGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN*

>Glyma.19g188700.3.p sequence-type=predicted peptide transcript=Glyma.19g188700.3 locus=Glyma.19g188700 id=Glyma.19g188700.3.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAVHPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAASGVISHVPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTHSGTYLPQAQQISQPVISSRDSSTQQARYIPSGRQRDVEKGSGSSSVGSNSGRGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo