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Report for Sequence Feature Glyma.19g188500

Feature Type:gene_model
Chromosome:Gm19
Start:44660082
stop:44661790
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g188500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27650.1AT Eukaryotic release factor 1 (eRF1) family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0032790GO-bp ribosome disassembly EnsemblGenomesN/AIEA
GO:0070481GO-bp nuclear-transcribed mRNA catabolic process, non-stop decay EnsemblGenomesN/AIEA
GO:0070651GO-bp nonfunctional rRNA decay EnsemblGenomesN/AIEA
GO:0070966GO-bp nuclear-transcribed mRNA catabolic process, no-go decay EnsemblGenomesN/AIEA
GO:0071025GO-bp RNA surveillance EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
KOG2869 KOG Meiotic cell division protein Pelota/DOM34 JGI N/AIEA
PTHR10853Panther PELOTA JGI N/AIEA
PF03463PFAM eRF1 domain 1 JGI N/AIEA
PF03465PFAM eRF1 domain 3 JGI N/AIEA

Expression Patterns of Glyma.19g188500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g188500 not represented in the dataset
Glyma.19g188500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g188500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g37250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g188500
>Glyma.19g188500.1 sequence-type=CDS polypeptide=Glyma.19g188500.1.p locus=Glyma.19g188500 ID=Glyma.19g188500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACTCTTGGAAAAGGATTTCGCGGTGAACCAAACCGGAACTGCGAAGCTCGTGGCCGAAGAACCCGACGACGTGTGGCTCCTCTACAACCTCATCCTCCCCGGCGACATCGTTTCGACCGACACCACCCGCAAGGTCCACCTCGATTCCTCCGCCAAGAAGAACACCGCCTCACGTGTGAAACTCACCCTCGACATCAAAGTCACGTGCCGTGACTTCCACAAAGACTCCTCCACTCTCCGACTCCACGGCCGCAACCTCCAACCCAACCAGCACGTCGCCGCCGGCTCCTTCCACACCCTCACCCTCGAACCCCACAAACCCTTCCACCTCCGCAAGAAGCTTTGGCAAAACGACGCCGTCGAAACCCTAAACGAATCCACCGAGAATTCCAATCCCAATACCAATTCCCCCGACCTCGCCGTCGTTCTCTTCCACCCGCACCATGCGGAGATTCACCTTATCGCACAGGGAGTCGCCACGCGCTGCACCAAGATCGAACCCTCTTCAAACTCCAGAAACTCCGTGTATTTCCGACAGGTGTTCGCGGCGTTCGTGAAGCGCGTGGATTTTAAGGTTGTGAAGCGCGTGGTGATAACGAGCGAGGAGTTTCGTAGGTTTGTGATGTCGGAAGCGAGGAAGTCGAGGATGCGGTCGATCGAGGAGAACCAGTCGCGAATAATGGTCGTTGCGGGCGGTGATAGTTTGGAGAAAGTGATGGGTGACCGGGCGGTGATGGAGTTGGTGAAGGACAAGAAGGTGGCGGCGTTTAGAGAGTTGTGGGAGATGGTGTGCGACGATTCGGACCGCGCGTGTTATGGACCTGCGGAGGTGGAGCGTGCGCGTGAGATGAGGGCCATTGAGACACTTCTGATAACCGATGATCTTTATAGGAACGAAGATGTTGAGACGAGAAAAAAGTACGCGAGTTTGGTGAAGTCGGTGAAAGAGGGTGGAGGAAAGGCTTTGGTGTATTCGTCGATGCATGTTTCTGCACCGCAACTCGCTCAACTCACGGGTGTTGCGGCAATTCTCAGGTTTCCCTTGCCTGAACTCGAAGATGTAAATGGGTGCTGA
Predicted protein sequences of Glyma.19g188500
>Glyma.19g188500.1.p sequence-type=predicted peptide transcript=Glyma.19g188500.1 locus=Glyma.19g188500 ID=Glyma.19g188500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLLEKDFAVNQTGTAKLVAEEPDDVWLLYNLILPGDIVSTDTTRKVHLDSSAKKNTASRVKLTLDIKVTCRDFHKDSSTLRLHGRNLQPNQHVAAGSFHTLTLEPHKPFHLRKKLWQNDAVETLNESTENSNPNTNSPDLAVVLFHPHHAEIHLIAQGVATRCTKIEPSSNSRNSVYFRQVFAAFVKRVDFKVVKRVVITSEEFRRFVMSEARKSRMRSIEENQSRIMVVAGGDSLEKVMGDRAVMELVKDKKVAAFRELWEMVCDDSDRACYGPAEVERAREMRAIETLLITDDLYRNEDVETRKKYASLVKSVKEGGGKALVYSSMHVSAPQLAQLTGVAAILRFPLPELEDVNGC*






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