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Report for Sequence Feature Glyma.19g188300

Feature Type:gene_model
Chromosome:Gm19
Start:44653029
stop:44657726
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g188300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36680.1AT Modifier of rudimentary (Mod(r)) protein JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0032509GO-bp endosome transport via multivesicular body sorting pathway EnsemblGenomesN/AIEA
GO:0000813GO-cc ESCRT I complex EnsemblGenomesN/AIEA
KOG3270 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR13678Panther WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED JGI N/AIEA
PTHR13678:SF1Panther JGI N/AIEA
PF07200PFAM Modifier of rudimentary (Mod(r)) protein JGI N/AIEA

Expression Patterns of Glyma.19g188300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g188300
ParalogEvidenceComments
Glyma.03g188100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g188300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g37230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g188300
>Glyma.19g188300.2 sequence-type=transcript locus=Glyma.19g188300 ID=Glyma.19g188300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCAAAATGGTTTTATGCTTAAAATTTTTTATAAAAAAAATAAAGCCATTTTCCGATTTCTAAGAAGGAACCAGTTTTTGTTCCCACTTTCCTAAGTTTCCTTCTCGCTCCCGTCTCTGAAATTTCGAGGGTTTCATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACAGTATGAGCACTGACATGAAATATTAAGAAATTAAAACTGGTTTTGGCAAGTATGTATTTGATTTTTGGTTCATTATTGTCAATAGTTATCATTGGTCAAAGATACTTGCCACCAAATTACATAGAGTCACAGTCGTTGGGATAGAACCATCTACTACAAATTAGATTGTTCATATATGTGCAGCCTGAGATTGTTCATTGTGGTGACATTGTCGAGTGGTTTCATGCCACTTGGAATGAGGTATGGACTTGCATTTACTTTTCTAGTTTGCCATCGGCTATCTTCAACTTTATTTGTATGAACTCTGAAGTGTGCTGTAGCTTATGAGATCATCATCGCCGATATAGGATTTACTGTTGTGTTGTAAAATGTAAAAAATGCTGACTTTCTTTTC
Coding sequences of Glyma.19g188300
>Glyma.19g188300.1 sequence-type=CDS polypeptide=Glyma.19g188300.1.p locus=Glyma.19g188300 ID=Glyma.19g188300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACATTATCATTGGTCAAAGATACTTGCCACCAAATTACATAG

>Glyma.19g188300.2 sequence-type=CDS polypeptide=Glyma.19g188300.2.p locus=Glyma.19g188300 ID=Glyma.19g188300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACAGTATGA
Predicted protein sequences of Glyma.19g188300
>Glyma.19g188300.1.p sequence-type=predicted peptide transcript=Glyma.19g188300.1 locus=Glyma.19g188300 ID=Glyma.19g188300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSEAAAVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSAASLLQRIQESVNKTDEESENLHHNLLDREIDLGAFLQKYKKLRTTYHRKTLVHLAAKTSTLSLVKDTCHQIT*

>Glyma.19g188300.2.p sequence-type=predicted peptide transcript=Glyma.19g188300.2 locus=Glyma.19g188300 ID=Glyma.19g188300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSEAAAVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSAASLLQRIQESVNKTDEESENLHHNLLDREIDLGAFLQKYKKLRTTYHRKTLVHLAAKTSTV*






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