Glyma.19g187900

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Report for Sequence Feature Glyma.19g187900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44599748
stop:	44609219
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g187900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36720.1	AT	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
PF00628	PFAM	PHD-finger	JGI	N/A	IEA

Expression Patterns of Glyma.19g187900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g187900

Paralog	Evidence	Comments
Glyma.03g187800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g187900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g37190	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g187900

Limit To All Plant Sequences

>Glyma.19g187900.2 sequence-type=transcript locus=Glyma.19g187900 ID=Glyma.19g187900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAAATCTCATCTTCTACGACGTTAtctctctctctctctcactctctctctctctctGTGCCTCACTGATTGAGTGAAACCAGTGCCAGTGAAACCTTTTTTTCCTTCCTCGCCCCCTTTTTCTTCCAATCCAATCAAAACCAAAACCCCTACGCTGATTCTCATGTTCAATTACGGTCGTTTGCTCAATTCAATTCCCCTCTCCGTTGCTTAGGTCTCATCTCAATTTCTCGCAGATTTAGCCGTTCATGGACGCCGCCGTGAAGCCGGAGACGGAATACGCGGCCGTTTCGACGGATCAGCCTCGGAAAGTTTCGGTGGTGAATGGTTACATTGTCTACACTCGCGCCAAGAGGTCACTGGATTCGTGCAACGGTTTTTCAGAACACGCGGAATTGAAGGATAACGCCGAGGTTGAAGTTAAAACGGAGAACGGAGAGTGTGAGAAGCTGAAAAATGAGTCCACAGAGGTGGTTGCGAGGACGCGCAAGCGGAGCCGGCGATCGGCGTTGGAAGCGAAGGTTGAGTGTTGTGATCAGATGGTTGTGAGTGAGACGGAACAAGTAGTTGCGAATGGCGGAAGCGGAATCAACGGTGCATTGGGAGCTCCGAGGAATAAGATGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAAAGCTCTTTGATACAGGTTTTCTTGATGGCGTTTCCGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGGGAGCTACCCTGCATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCCACATGAAGAAAGATACTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCGTTTGTGGAAAGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGGTTCTTTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAGTTAAGAGACACAGGAAGAAAAGAACAAAGTCGCTGTCAGTAAAGTTGAAGTCCCCCAAAAAAACTTTAAATTTGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCTTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTGGCAATATCTCTCTCAAAAGATAGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTATTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCACGTGGTGACTGGTACTGCCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCGCACAACGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTGCCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCTGATCTTAGTAGCTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGGTTTGGTCCACGCACAATAATACTCTGCGATCAGTGTGAAAAGGAATATCATGTTGGTTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAACTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACACTCTACTTTGGAGAATCTTTTGGTTAAGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGAGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTAGAATTTTTGGCTCAGATGTTGCTGAACTCCCTTTAGTTGCAACGAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAATCTTGTACTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACTGATAAATTTGGGTTTAGCAAGATGAATCCAGATGAGCTCACCAACTATAGAAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACCAATATGCTGCATAAAATGGTACCTTCGTGTCGGGTCATCAATAATCAATCATGACATTTTTTTTTATAGAAACGAAATCAATCGTGAAAGGGGAAAACCCCTAGCTTTCTCGCTTCCTTTTTCCCTTTCTTCTGGTTTTGTATATATTAAACTTTTGGCTATTTGAAGCCATTGTTGAAGCGTTCCTGCCATTTGTTTAAACATTTATAATGCCATGTATTCTATTTTTATTTTAATTTTAATTTTAGTAATATACAAGTTTAGAAGTTCTTGATCTCGGACAAGTACTTCGAAATATAAAATATCTTTACCCGATAATACTAGCGCCACAAGTTCGTTGTCTGCGAATGTAGG

Coding sequences of Glyma.19g187900

Limit To All Plant Sequences

>Glyma.19g187900.1 sequence-type=CDS polypeptide=Glyma.19g187900.1.p locus=Glyma.19g187900 ID=Glyma.19g187900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCGCCGTGAAGCCGGAGACGGAATACGCGGCCGTTTCGACGGATCAGCCTCGGAAAGTTTCGGTGGTGAATGGTTACATTGTCTACACTCGCGCCAAGAGGTCACTGGATTCGTGCAACGGTTTTTCAGAACACGCGGAATTGAAGGATAACGCCGAGGTTGAAGTTAAAACGGAGAACGGAGAGTGTGAGAAGCTGAAAAATGAGTCCACAGAGGTGGTTGCGAGGACGCGCAAGCGGAGCCGGCGATCGGCGTTGGAAGCGAAGGTTGAGTGTTGTGATCAGATGGTTGTGAGTGAGACGGAACAAGTAGTTGCGAATGGCGGAAGCGGAATCAACGGTGCATTGGGAGCTCCGAGGAATAAGATGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAAAGCTCTTTGATACAGGTTTTCTTGATGGCGTTTCCGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGGGAGCTACCCTGCATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCCACATGAAGAAAGATACTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCGTTTGTGGAAAGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGGTTCTTTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAGTTAAGAGACACAGGAAGAAAAGAACAAAGGCATCAAAAAGGATTATCTGTTCAAATACTTCCAAGAATGCTTCTGTGGCTGTTCTACCCCGGAAGAAAAATTTGTTGAAGATGAAAAAGAAGTCGCTGTCAGTAAAGTTGAAGTCCCCCAAAAAAACTTTAAATTTGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCTTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTGGCAATATCTCTCTCAAAAGATAGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTATTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCACGTGGTGACTGGTACTGCCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCGCACAACGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTGCCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCTGATCTTAGTAGCTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGGTTTGGTCCACGCACAATAATACTCTGCGATCAGTGTGAAAAGGAATATCATGTTGGTTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAACTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACACTCTACTTTGGAGAATCTTTTGGTTAAGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGAGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTAGAATTTTTGGCTCAGATGTTGCTGAACTCCCTTTAGTTGCAACGAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAATCTTGTACTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACTGATAAATTTGGGTTTAGCAAGATGAATCCAGATGAGCTCACCAACTATAGAAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACCAATATGCTGCATAAAATGGTACCTTCGTGTCGGGTCATCAATAATCAATCATGA

>Glyma.19g187900.2 sequence-type=CDS polypeptide=Glyma.19g187900.2.p locus=Glyma.19g187900 ID=Glyma.19g187900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCGCCGTGAAGCCGGAGACGGAATACGCGGCCGTTTCGACGGATCAGCCTCGGAAAGTTTCGGTGGTGAATGGTTACATTGTCTACACTCGCGCCAAGAGGTCACTGGATTCGTGCAACGGTTTTTCAGAACACGCGGAATTGAAGGATAACGCCGAGGTTGAAGTTAAAACGGAGAACGGAGAGTGTGAGAAGCTGAAAAATGAGTCCACAGAGGTGGTTGCGAGGACGCGCAAGCGGAGCCGGCGATCGGCGTTGGAAGCGAAGGTTGAGTGTTGTGATCAGATGGTTGTGAGTGAGACGGAACAAGTAGTTGCGAATGGCGGAAGCGGAATCAACGGTGCATTGGGAGCTCCGAGGAATAAGATGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAAAGCTCTTTGATACAGGTTTTCTTGATGGCGTTTCCGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGGGAGCTACCCTGCATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCCACATGAAGAAAGATACTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCGTTTGTGGAAAGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGGTTCTTTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAGTTAAGAGACACAGGAAGAAAAGAACAAAGTCGCTGTCAGTAAAGTTGAAGTCCCCCAAAAAAACTTTAAATTTGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCTTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTGGCAATATCTCTCTCAAAAGATAGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTATTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCACGTGGTGACTGGTACTGCCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCGCACAACGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTGCCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCTGATCTTAGTAGCTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGGTTTGGTCCACGCACAATAATACTCTGCGATCAGTGTGAAAAGGAATATCATGTTGGTTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAACTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACACTCTACTTTGGAGAATCTTTTGGTTAAGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGAGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTAGAATTTTTGGCTCAGATGTTGCTGAACTCCCTTTAGTTGCAACGAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAATCTTGTACTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACTGATAAATTTGGGTTTAGCAAGATGAATCCAGATGAGCTCACCAACTATAGAAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACCAATATGCTGCATAAAATGGTACCTTCGTGTCGGGTCATCAATAATCAATCATGA

Predicted protein sequences of Glyma.19g187900

Limit To All Plant Sequences

>Glyma.19g187900.1.p sequence-type=predicted peptide transcript=Glyma.19g187900.1 locus=Glyma.19g187900 ID=Glyma.19g187900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAAVKPETEYAAVSTDQPRKVSVVNGYIVYTRAKRSLDSCNGFSEHAELKDNAEVEVKTENGECEKLKNESTEVVARTRKRSRRSALEAKVECCDQMVVSETEQVVANGGSGINGALGAPRNKMELKMSKKIVVNRKPMTVKKLFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGATLHTLEVTVQNFVCSPHEERYFTCKRCKGCFPSSFVERVGPICRSCVESRKSEESSNNVVGKRVRSPRPVVLSNPSSTSELSVSSQVKRHRKKRTKASKRIICSNTSKNASVAVLPRKKNLLKMKKKSLSVKLKSPKKTLNLKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQIANRCIRIVKDIEADLSSCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLGVIKKKQEEKGLEPIIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGSDVAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMNPDELTNYRKNCHQMVSFKGTNMLHKMVPSCRVINNQS*

>Glyma.19g187900.2.p sequence-type=predicted peptide transcript=Glyma.19g187900.2 locus=Glyma.19g187900 ID=Glyma.19g187900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAAVKPETEYAAVSTDQPRKVSVVNGYIVYTRAKRSLDSCNGFSEHAELKDNAEVEVKTENGECEKLKNESTEVVARTRKRSRRSALEAKVECCDQMVVSETEQVVANGGSGINGALGAPRNKMELKMSKKIVVNRKPMTVKKLFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGATLHTLEVTVQNFVCSPHEERYFTCKRCKGCFPSSFVERVGPICRSCVESRKSEESSNNVVGKRVRSPRPVVLSNPSSTSELSVSSQVKRHRKKRTKSLSVKLKSPKKTLNLKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQIANRCIRIVKDIEADLSSCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLGVIKKKQEEKGLEPIIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGSDVAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMNPDELTNYRKNCHQMVSFKGTNMLHKMVPSCRVINNQS*

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