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Report for Sequence Feature Glyma.19g187600

Feature Type:gene_model
Chromosome:Gm19
Start:44588115
stop:44589512
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g187600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36750.1AT UDP-glucosyl transferase 73C1 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups JGI N/AIEA
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI N/AIEA
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI N/AIEA
PTHR11926:SF15Panther JGI N/AIEA
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI N/AIEA
PWY-2902SoyCyc9 cytokinin-O-glucosides biosynthesis Plant Metabolic Network ISS
PWY-6051SoyCyc9 2,4,6-trinitrotoluene degradation Plant Metabolic Network ISS
GN7V-47620SoyCyc9-rxn trans-zeatin O-β-D-glucosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g187600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g187600 not represented in the dataset
Glyma.19g187600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g187600
ParalogEvidenceComments
Glyma.03g187700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g187600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.19g187600
>Glyma.19g187600.1 sequence-type=CDS polypeptide=Glyma.19g187600.1.p locus=Glyma.19g187600 ID=Glyma.19g187600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGACCTTGCAACAATATTAGCACAGCATAGCAACATTGTTACAGTAGTCACAACCCCACATAACGCTTCTCGTTTATCAGAAACTTTTGCTCGTGCTTCTGACTCAGGCCTACACCTCCGATTAGTTCAACTCCAATTTCCATCACAAGATGCTGGACTTCCAGAAGGGTGTGAGAATTTTGACATGCTTCCTTCAATGGGTATGGGCTTGAGTTTCTTCCTTGCTGCAAACAACTTTCTGCTGGAACCAGCTGAGAAAGTGTTTGAAGAGTTAACACCAAAACCAAACTGCATCATCTCTGATGTGAGTTTGGCATACACAGCCCACATCGCCACCAAATTCAACATCCCCAGAATTTCTTTCTACGGACAAAAGTTGGTCACTTCTAATCTTCTCGAGAGCATAGCCACGGATTCGGAGTATTTTTTGATACCTGACATCCCCGACAAAATTGAGATCACCAAAGAACACACGCCAAGACCAATCGAGTTTGTCGACAAAATGGCCGCGGCTGAAGCGGTAAGTTATGGCGTGGTGGTGAATTCTTTTAAGGAGTTGGAGCCAGCATATGCAGGGGATTTCAAGAAGACCAGAAACGATAAAGTAAACAGGAATCAATTGGACAAGGCTCAGAGAGGGAACAAGGCTTCAAGTGATGCGCACAGTTGCATGAAGTGGCTTCACTTGCAAAAAACAAATTCAGTAATTTACGTGTGCCTTGGAAGTATATGCAATTTAATTCCGTTGCAGTTTATAGAGCTTGCTAAAAAACCATTCATTTGGGTTATCAGGGAGAGAAATCAAACACAAGTGTTGAACAAATGGATTAAGGAATCCGGGTTTGAGGAAAAGACCAAGGGGGTGGGTCTTTTGATTCGAGGTTGGGCTCCTCAGGTACTGATATTATCACACCCTGCAATTGGAGGGTTCATAACACACTGTGGTTGGAACTCAACCTTAGAAGCAATATGTGCTAGCGTGCCAATGCTTACATGGCCGTTGTTTGGGGATCAATTCTTCAATGAGAAGTTCATTGTGCAGGTACTTAGAATTGGAGTAAGAGTTGGGGTGGAAAGTCCGGTAATCTGGGGTGATGAAGAGAAAAGTGGGGTGTTGGTGAAGAAAGAAGATGTTGTGAGGGCTATAGAGAAGTTAATGGATGAGGGAAATGAAAGGGAAGAGAAGAGAAAAAGGGCTAGAGATCTTGCGGAGATGGCTAAGAAAGCTGTAGAAGGAGGATCTTCTCACTTCAATGTAACCCAGCTAATCCAAGATATCATGCAACAGTCCAACAAAAACTAA
Predicted protein sequences of Glyma.19g187600
>Glyma.19g187600.1.p sequence-type=predicted peptide transcript=Glyma.19g187600.1 locus=Glyma.19g187600 ID=Glyma.19g187600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTDLATILAQHSNIVTVVTTPHNASRLSETFARASDSGLHLRLVQLQFPSQDAGLPEGCENFDMLPSMGMGLSFFLAANNFLLEPAEKVFEELTPKPNCIISDVSLAYTAHIATKFNIPRISFYGQKLVTSNLLESIATDSEYFLIPDIPDKIEITKEHTPRPIEFVDKMAAAEAVSYGVVVNSFKELEPAYAGDFKKTRNDKVNRNQLDKAQRGNKASSDAHSCMKWLHLQKTNSVIYVCLGSICNLIPLQFIELAKKPFIWVIRERNQTQVLNKWIKESGFEEKTKGVGLLIRGWAPQVLILSHPAIGGFITHCGWNSTLEAICASVPMLTWPLFGDQFFNEKFIVQVLRIGVRVGVESPVIWGDEEKSGVLVKKEDVVRAIEKLMDEGNEREEKRKRARDLAEMAKKAVEGGSSHFNVTQLIQDIMQQSNKN*






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