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Report for Sequence Feature Glyma.19g184600

Feature Type:gene_model
Chromosome:Gm19
Start:44328063
stop:44330015
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g184600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53220.1AT Thioredoxin superfamily protein JGI N/AIEA
GO:0006662GO-bp glycerol ether metabolic process EnsemblGenomesN/AIEA
GO:0034599GO-bp cellular response to oxidative stress EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004791GO-mf thioredoxin-disulfide reductase activity EnsemblGenomesN/AIEA
GO:0015035GO-mf protein disulfide oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016671GO-mf oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor EnsemblGenomesN/AIEA
GO:0047134GO-mf protein-disulfide reductase activity EnsemblGenomesN/AIEA
KOG0907 KOG Thioredoxin JGI N/AIEA
PTHR10438Panther THIOREDOXIN JGI N/AIEA
PTHR10438:SF10Panther JGI N/AIEA
PF00085PFAM Thioredoxin JGI N/AIEA
GN7V-65319SoyCyc9-rxn monodehydroascorbate reductase (NADH) Plant Metabolic Network ISS

Expression Patterns of Glyma.19g184600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g184600
ParalogEvidenceComments
Glyma.03g184100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g184600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g36850 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g184600
>Glyma.19g184600.2 sequence-type=transcript locus=Glyma.19g184600 ID=Glyma.19g184600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATAGAGGCTGAGTTCTGATAAGAAAAAGAAACGACAATGGAGGGAAGCAACGAGCAAGATAAGGCAAAGAAAGGGTTAGAAGGCACTGCCATAGATTTACCTACTAACCGCCGTGTCAACCTGAAAAGCGCTACCAGCGACGACGACTTCACCAACATTCTTGCACACATCAAATCCTCCAAAACCCCCGCTGTCATCAAATATGGCGCTCCTTGGTATGCTACCACTTCTCCCTAGTAATGCGTCGGTTCTAATTGTTTTGCACACCAGGTGTCCCGTTTGTATCCAAATTCTCCCAGCATTCTGTAGACTGAGCAATAATTTTCCAAAGCTTACCTTTGTATACACAGACATCGATGAATGCCCAGAAACAACTCAACACATTCGGTACACTCCCACCTTCCAATTTTACCGGAATGGTGAAAAGGTAGATGAGATGTATGGTGCTGGTGGGGAAGAGAGGCTCCATGATCGTCTGTGGTTGCACTCTTAAGTCCATGTAAGAGAAACATTATGTTTGCAATTTCTCTATGTAAGTAGCATAGTCAATCATGAACAATTTCGTGAATGGTAGTACAAAACCTAATTATTCCATGTCTCTATAAGAAATTG
Coding sequences of Glyma.19g184600
>Glyma.19g184600.1 sequence-type=CDS polypeptide=Glyma.19g184600.1.p locus=Glyma.19g184600 ID=Glyma.19g184600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGAAGCAACGAGCAAGATAAGGCAAAGAAAGGGTTAGAAGGCACTGCCATAGATTTACCTACTAACCGCCGTGTCAACCTGAAAAGCGCTACCAGCGACGACGACTTCACCAACATTCTTGCACACATCAAATCCTCCAAAACCCCCGCTGTCATCAAATATGGCGCTCCTTGGTGTCCCGTTTGTATCCAAATTCTCCCAGCATTCTGTAGACTGAGCAATAATTTTCCAAAGCTTACCTTTGTATACACAGACATCGATGAATGCCCAGAAACAACTCAACACATTCGGTACACTCCCACCTTCCAATTTTACCGGAATGGTGAAAAGGTAGATGAGATGTATGGTGCTGGTGGGGAAGAGAGGCTCCATGATCGTCTGTGGTTGCACTCTTAA

>Glyma.19g184600.2 sequence-type=CDS polypeptide=Glyma.19g184600.2.p locus=Glyma.19g184600 ID=Glyma.19g184600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCTCCTTGGTATGCTACCACTTCTCCCTAGTAATGCGTCGGTTCTAATTGTTTTGCACACCAGGTGTCCCGTTTGTATCCAAATTCTCCCAGCATTCTGTAGACTGAGCAATAATTTTCCAAAGCTTACCTTTGTATACACAGACATCGATGAATGCCCAGAAACAACTCAACACATTCGGTACACTCCCACCTTCCAATTTTACCGGAATGGTGAAAAGGTAGATGAGATGTATGGTGCTGGTGGGGAAGAGAGGCTCCATGATCGTCTGTGGTTGCACTCTTAA
Predicted protein sequences of Glyma.19g184600
>Glyma.19g184600.1.p sequence-type=predicted peptide transcript=Glyma.19g184600.1 locus=Glyma.19g184600 ID=Glyma.19g184600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSNEQDKAKKGLEGTAIDLPTNRRVNLKSATSDDDFTNILAHIKSSKTPAVIKYGAPWCPVCIQILPAFCRLSNNFPKLTFVYTDIDECPETTQHIRYTPTFQFYRNGEKVDEMYGAGGEERLHDRLWLHS*

>Glyma.19g184600.2.p sequence-type=predicted peptide transcript=Glyma.19g184600.2 locus=Glyma.19g184600 ID=Glyma.19g184600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALLGMLPLLPSNASVLIVLHTRCPVCIQILPAFCRLSNNFPKLTFVYTDIDECPETTQHIRYTPTFQFYRNGEKVDEMYGAGGEERLHDRLWLHS*






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