Glyma.19g182300

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Report for Sequence Feature Glyma.19g182300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44118211
stop:	44122192
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g182300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37040.1	AT	PHE ammonia lyase 1	JGI	N/A	IEA
GO:0006559	GO-bp	L-phenylalanine catabolic process	EnsemblGenomes	N/A	IEA
GO:0009058	GO-bp	biosynthetic process	JGI	N/A	IEA
GO:0009698	GO-bp	phenylpropanoid metabolic process	EnsemblGenomes	N/A	IEA
GO:0009800	GO-bp	cinnamic acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0016829	GO-mf	lyase activity	EnsemblGenomes	N/A	IEA
GO:0016841	GO-mf	ammonia-lyase activity	EnsemblGenomes	N/A	IEA
GO:0016841	GO-mf	ammonia-lyase activity	JGI	N/A	IEA
GO:0045548	GO-mf	phenylalanine ammonia-lyase activity	EnsemblGenomes	N/A	IEA
KOG0222	KOG	Phenylalanine and histidine ammonia-lyase	JGI	N/A	IEA
PTHR10362	Panther	HISTIDINE AMMONIA-LYASE	JGI	N/A	IEA
PTHR10362:SF3	Panther		JGI	N/A	IEA
PF00221	PFAM	Aromatic amino acid lyase	JGI	N/A	IEA
PWY-1121	SoyCyc9	suberin monomers biosynthesis	Plant Metabolic Network		ISS
PWY-6457	SoyCyc9	trans-cinnamoyl-CoA biosynthesis	Plant Metabolic Network		ISS
PWY-7186	SoyCyc9	superpathway of scopolin and esculin biosynthesis	Plant Metabolic Network		ISS
PWY1F-467	SoyCyc9	phenylpropanoid biosynthesis, initial reactions	Plant Metabolic Network		ISS
GN7V-61343	SoyCyc9-rxn	phenylalanine/tyrosine ammonia-lyase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.19g182300

Locus	Gene Symbol	Protein Name
	PAL1.1	phenylalanine ammonia-lyase 1.1

Expression Patterns of Glyma.19g182300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g182300 not represented in the dataset	Glyma.19g182300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g182300

Paralog	Evidence	Comments
Glyma.03g181700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g182300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g36620	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.19g182300

Limit To All Plant Sequences

>Glyma.19g182300.1 sequence-type=CDS polypeptide=Glyma.19g182300.1.p locus=Glyma.19g182300 ID=Glyma.19g182300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCAACTAATGGCCACCAAAATGGTTCGTTTTGCTTGTCCAGTACTAAGGGAAGTGATCCGTTAAACTGGGGAGCGGCGGCGGAGGCGATGAAGGGGAGCCACCTGGACGAGGTGAAGCGCATGGTGTCCGAGTACCGGAAGCCGGTGGTCCGGCTCGGCGGCGAGACGCTCACCATCGCCCAGGTGGCCGCCGTGGCTGGACACGACCACGGCGTGACGGTGGAGCTCTCGGAGTCTGCCCGAGAAGGAGTGAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAACGGAACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGGTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGGATCAACACTCTTCTTCAAGGGTACTCAGGCATTAGATTTGAAATCCTAGAAGCCATCACCAAGCTCCTCAACAACAATGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGACCTAATGGAGAAGTACTTAACGCTAAGGAAGCTTTTGAATTGGCTAGCATCAATTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGATTAGCTTCTATGGTTCTCTTTGAGGCTAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCGGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATTTGACACACAAGTTAAAGCACCATCCTGGTCAAATTGAGGCTGCTGCAATTATGGAGCATATTTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATTGATCCATTGCAAAAGCCAAAACAAGATCGATATGCCCTTAGAACTTCACCACAATGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCGACTAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTCTCAAGGAACAAGGCATTACATGGTGGCAATTTCCAAGGAACCCCAATTGGAGTCTCTATGGACAACACGCGTCTGGCTCTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTGGACTATGGGTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACTAGCCATGTCCAAAGTGCTGAGCAGCATAACCAGGATGTGAACTCTTTGGGTTTAATTTCATCCAGAAAGACAAATGAAGCTATCGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCGATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAGAACACTGTGAGCCAAGTTTCCAAAAGGATTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAAAAGGATCTGCTAAAAGTGGTTGATAGGGAGTACGTATTTTCCTACATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCCTTGGTAAATGCAGAGAATGAGAAGGATATGAACACATCCATCTTTCAAAAGATAGCAAACTTTGAGGAGGAGTTGAAGAATTTCTTGCCAAAAGAGGTTGAAAGTGCAAGGGTTGCTTATGAGAGTGGCAAAGCTGCAATTCCGAACAAGATCCAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAATTAGGGACTGGGTTGCTAACTGGAGAGAAGGTCAGGTCACCAGGTGAAGAGTTTGACAAATTATTCACAGCAATGTGCCAGGGCAAAATTATTGATCCTCTTCTGGAGTGCCTTGGGGAGTGGAATGGAGCTCCTCTTCCAATCTGTTGA

Predicted protein sequences of Glyma.19g182300

Limit To All Plant Sequences

>Glyma.19g182300.1.p sequence-type=predicted peptide transcript=Glyma.19g182300.1 locus=Glyma.19g182300 ID=Glyma.19g182300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEATNGHQNGSFCLSSTKGSDPLNWGAAAEAMKGSHLDEVKRMVSEYRKPVVRLGGETLTIAQVAAVAGHDHGVTVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTTGVNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLMQKLRQVLVDHALVNAENEKDMNTSIFQKIANFEEELKNFLPKEVESARVAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC*

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