Glyma.19g182100

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Report for Sequence Feature Glyma.19g182100

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44074293
stop:	44078620
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g182100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37210.1	AT	lysine decarboxylase family protein	JGI	N/A	IEA
AT3G53450.1	AT	Putative lysine decarboxylase family protein	JGI	N/A	IEA
GO:0009691	GO-bp	cytokinin biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
PF03641	PFAM	Possible lysine decarboxylase	JGI	N/A	IEA
PWY-2681	SoyCyc9	trans-zeatin biosynthesis	Plant Metabolic Network		ISS
GN7V-54617	SoyCyc9-rxn	N⁶-(Δ²-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.19g182100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g182100

Paralog	Evidence	Comments
Glyma.03g181300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g182100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g36590	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g182100

Limit To All Plant Sequences

>Glyma.19g182100.2 sequence-type=transcript locus=Glyma.19g182100 ID=Glyma.19g182100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAATCATAGCCACCACTATTATTGTTTTACTATTTCAAGGCTGATTAATATTTGTTTTTTGAATGGTGTTGGAATTAAGGTCTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGTTTAGTTTCACAAGCTGTTCATGATGGCGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTGACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAGCATTCAGACGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGGATTCATGACAAGCCAGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCAACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCGTGTCATGAGGGTGTTGCTTCCAAGTTGAGTTGGCAGATAGAACAGCAGCTTGCATACCCTCAAGATTATGACATGTCAAGGTAGTTGGGTTACTTCACGTGCACGGAACATTAGACCATATAGAATTTTGGAGATGGAACAAAGTTATATTTTCGACTACCGCACTATTCTGCTTTTTATCCTTTTTAATTTCTTGTGTAAATTACCAGGATTGACCTTAATATGTGATACTACTTTATTAGTTATTACCTTGTGAAACTTTGATTCTCTTAAATTTGAACTTACTATTATCATTCAATGCCAATTAATTTTTACGTTTAACTAGTCAAAAGAA

Coding sequences of Glyma.19g182100

Limit To All Plant Sequences

>Glyma.19g182100.1 sequence-type=CDS polypeptide=Glyma.19g182100.1.p locus=Glyma.19g182100 ID=Glyma.19g182100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACACGAAGTGAGATAAGGCATTCAAAGTTCAAGAGGATTTGTGTGTTCTGTGGCAGTAGCCCTGGCAAGAAGAGTAGCTACCAAGATGCTGCCATTCAACTTGGCAATGAATTGGTCTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGTTTAGTTTCACAAGCTGTTCATGATGGCGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTGACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAGCATTCAGACGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGGATTCATGACAAGCCAGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCAACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCGTGTCATGAGGGTGTTGCTTCCAAGTTGAGTTGGCAGATAGAACAGCAGCTTGCATACCCTCAAGATTATGACATGTCAAGGTAG

>Glyma.19g182100.2 sequence-type=CDS polypeptide=Glyma.19g182100.2.p locus=Glyma.19g182100 ID=Glyma.19g182100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTAGTTTCACAAGCTGTTCATGATGGCGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTGACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAGCATTCAGACGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGGATTCATGACAAGCCAGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCAACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCGTGTCATGAGGGTGTTGCTTCCAAGTTGAGTTGGCAGATAGAACAGCAGCTTGCATACCCTCAAGATTATGACATGTCAAGGTAG

Predicted protein sequences of Glyma.19g182100

Limit To All Plant Sequences

>Glyma.19g182100.1.p sequence-type=predicted peptide transcript=Glyma.19g182100.1 locus=Glyma.19g182100 ID=Glyma.19g182100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METRSEIRHSKFKRICVFCGSSPGKKSSYQDAAIQLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHEGVASKLSWQIEQQLAYPQDYDMSR*

>Glyma.19g182100.2.p sequence-type=predicted peptide transcript=Glyma.19g182100.2 locus=Glyma.19g182100 ID=Glyma.19g182100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHEGVASKLSWQIEQQLAYPQDYDMSR*

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