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Report for Sequence Feature Glyma.19g171000

Feature Type:gene_model
Chromosome:Gm19
Start:43229301
stop:43230858
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g171000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28780.1AT GDSL-like Lipase/Acylhydrolase superfamily protein JGI N/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds EnsemblGenomesN/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds JGI N/AIEA
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI N/AIEA
PTHR22835:SF39Panther JGI N/AIEA
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI N/AIEA
LIPAS-PWYSoyCyc9 triacylglycerol degradation Plant Metabolic Network ISS
GN7V-65825SoyCyc9-rxn triacylglycerol lipase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g171000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g171000 not represented in the dataset
Glyma.19g171000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g171000
ParalogEvidenceComments
Glyma.03g169800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g171000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g35441 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g171000
>Glyma.19g171000.1 sequence-type=CDS polypeptide=Glyma.19g171000.1.p locus=Glyma.19g171000 ID=Glyma.19g171000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAATGTATTACTGAATAATAAGCGGATTCCTTTTTTGTCCATCACCATTAAAATGTTTGAGCAGTACCAGGAACGGTTAAGTGCAGTTGTAGGGGCTAAACGGGCGAAGAAGGTTGTGAATGAAGCTCTGGTGCTAATGACTTTGGGTGGTAACGACTTTGTTAACAACTATTTCTTGGCTGGCTCCTATTACTCCGAGAGGTTGTATGAGTTGGGGGCTCGACGGGTGCTGGTGACAGGAACTGGTCCATTAGGGTGTGTTCCTTCCCAGCTTGCTATGAGGAGCACAAATGGGGAGTGTGTACCCGTGTTACAACAAGCCACACAAATTTTCAACCCTTTGCTCGATAACATGACCAAAGATCTAAACTCCCAACTTGGTTTTGTTACATCTAAGATGGCATGTTGTGGACAAGGCCCATACAATGGGCTGGGCCCGTGTAACCCTTTGTCGAGTCTGTGCTCAAACCGGGATGCTTATGCATTTTGGGATGCTTTCCATCCAAGCCAACGTGCGCTTGATTTCATTGTGGATGGGATCTTCAAGGGAACCAGCAACCTTATGAGCCCTATGAACCTCAGCACCATAATGGCCATGGACTCCAACATCTAA
Predicted protein sequences of Glyma.19g171000
>Glyma.19g171000.1.p sequence-type=predicted peptide transcript=Glyma.19g171000.1 locus=Glyma.19g171000 ID=Glyma.19g171000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQNVLLNNKRIPFLSITIKMFEQYQERLSAVVGAKRAKKVVNEALVLMTLGGNDFVNNYFLAGSYYSERLYELGARRVLVTGTGPLGCVPSQLAMRSTNGECVPVLQQATQIFNPLLDNMTKDLNSQLGFVTSKMACCGQGPYNGLGPCNPLSSLCSNRDAYAFWDAFHPSQRALDFIVDGIFKGTSNLMSPMNLSTIMAMDSNI*






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