Glyma.19g169600

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.19g169600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.19g169600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.19g169600

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43030982
stop:	43034448
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g169600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01435.1	AT	Expressed protein	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006357	GO-bp	regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0006357	GO-bp	regulation of transcription from RNA polymerase II promoter	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	JGI	N/A	IEA
GO:0003712	GO-mf	transcription cofactor activity	EnsemblGenomes	N/A	IEA
PF10280	PFAM	Mediator complex protein	JGI	N/A	IEA

Proteins Associated with Glyma.19g169600

Locus	Gene Symbol	Protein Name
	MED11-2	Mediator Complex 11 gene 2

Expression Patterns of Glyma.19g169600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g169600 not represented in the dataset	Glyma.19g169600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g169600

Paralog	Evidence	Comments
Glyma.03g168300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g169600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g35290	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g169600

Limit To All Plant Sequences

>Glyma.19g169600.2 sequence-type=transcript locus=Glyma.19g169600 ID=Glyma.19g169600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTTTAGAATTTGAAAAAGTAATTTACAACTACCTAAAAACACATAATTCTAAATCCCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGTTCTCATTGGTTCTGGctctcaagctctctctatctctctctctctctgAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTA

>Glyma.19g169600.3 sequence-type=transcript locus=Glyma.19g169600 ID=Glyma.19g169600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTTTAGAATTTGAAAAAGTAATTTACAACTACCTAAAAACACATAATTCTAAATCCCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTA

>Glyma.19g169600.4 sequence-type=transcript locus=Glyma.19g169600 ID=Glyma.19g169600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTTTAGAATTTGAAAAAGTAATTTACAACTACCTAAAAACACATAATTCTAAATCCCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGTTCTCATTGGTTCTGGctctcaagctctctctatctctctctctctctgAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTA

>Glyma.19g169600.5 sequence-type=transcript locus=Glyma.19g169600 ID=Glyma.19g169600.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTTTAGAATTTGAAAAAGTAATTTACAACTACCTAAAAACACATAATTCTAAATCCCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGTTCTCATTGGTTCTGGctctcaagctctctctatctctctctctctctgAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTA

Coding sequences of Glyma.19g169600

Limit To All Plant Sequences

>Glyma.19g169600.1 sequence-type=CDS polypeptide=Glyma.19g169600.1.p locus=Glyma.19g169600 ID=Glyma.19g169600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma.19g169600.2 sequence-type=CDS polypeptide=Glyma.19g169600.2.p locus=Glyma.19g169600 ID=Glyma.19g169600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma.19g169600.3 sequence-type=CDS polypeptide=Glyma.19g169600.3.p locus=Glyma.19g169600 ID=Glyma.19g169600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma.19g169600.4 sequence-type=CDS polypeptide=Glyma.19g169600.4.p locus=Glyma.19g169600 ID=Glyma.19g169600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma.19g169600.5 sequence-type=CDS polypeptide=Glyma.19g169600.5.p locus=Glyma.19g169600 ID=Glyma.19g169600.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

Predicted protein sequences of Glyma.19g169600

Limit To All Plant Sequences

>Glyma.19g169600.1.p sequence-type=predicted peptide transcript=Glyma.19g169600.1 locus=Glyma.19g169600 ID=Glyma.19g169600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma.19g169600.2.p sequence-type=predicted peptide transcript=Glyma.19g169600.2 locus=Glyma.19g169600 ID=Glyma.19g169600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma.19g169600.3.p sequence-type=predicted peptide transcript=Glyma.19g169600.3 locus=Glyma.19g169600 ID=Glyma.19g169600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma.19g169600.4.p sequence-type=predicted peptide transcript=Glyma.19g169600.4 locus=Glyma.19g169600 ID=Glyma.19g169600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma.19g169600.5.p sequence-type=predicted peptide transcript=Glyma.19g169600.5 locus=Glyma.19g169600 ID=Glyma.19g169600.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSQGQTTSLQRLQNVEKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain