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Report for Sequence Feature Glyma.19g168200

Feature Type:gene_model
Chromosome:Gm19
Start:42908207
stop:42915046
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g168200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43960.1AT Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
KOG0116 KOG RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains JGI N/AIEA
PTHR10693Panther RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN JGI N/AIEA
PTHR10693:SF8Panther JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA
PF02136PFAM Nuclear transport factor 2 (NTF2) domain JGI N/AIEA

Expression Patterns of Glyma.19g168200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g168200 not represented in the dataset
Glyma.19g168200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g168200
ParalogEvidenceComments
Glyma.03g167100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g168200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g35151 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g168200
>Glyma.19g168200.2 sequence-type=transcript locus=Glyma.19g168200 ID=Glyma.19g168200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTTCCCTCATTTTTTAACATTCCTCTCTGCGCTGCGCACCATTCTCAATCTCCGATCTATAAACCCCCAAACCCTCCTCCATTCCCAGCCAtctctctctctctctctAAAACCAAGTCTCGTTTCTCTCTCCTCTTGCTGGGCCTCTTCTTCGGGCTTCCCGGCCCATCGCCGACTCCAACGCCACAACCTTTTTCTGCTTTTTCGATTTAGGGTTTTCGCGCGCTCTCCCTTCCTTCTCCTGGATCTGCTAGGAGAAGCGCTGAATGCTCTGAGCTTCAACGCTGTTTGTTAGAGATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCACAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTTGACGGAGACTCCGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGAGGAAAATGTGGCAAAAGCATGCACAGGGATACCATTCAAGGGCTTATACAATTAGCGAAATCTGTGCTTGGTGTGGGTATTTACTACAGAACATTTGCTTCTGTGGTTTCAGATAAAGTAATCTTAACGTTTTGGGTGCGTCTTTTTCAAGTAAAAGCCATTGAGACTTAAACTAGTTTGTTTTGCAAGCATAGATCAGTTGGTTCCCCTTGAATGTTAGTTATTATGCCATTCAGGTGGGAAGTTTTGGTTATTTGTATTTGTATTGGATTGTGGGGGCCTTTTAATGAGAGGGGTGTTGAAAGTAACAAAGTGGTTTAGACATCAATAGAGGTGGTGCTTAATTATCAGATGTTGCGGTGCATTTCTGTGTGCATCACCTCGTTACCTTTGACTTGTTTTGAGAGTACCATGAGAATCTTGTAATTTCTTTCCTTCTAATTTTTGGTATTGTTGACCGGAAAATAACCAATCTCGTCATTTAATTATTG

>Glyma.19g168200.3 sequence-type=transcript locus=Glyma.19g168200 ID=Glyma.19g168200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGCTTTTGGGCTAGGTCTCCTGTTTCCTTAGGCATGATCTAGCTACAAGACCAGTTTCCATTGTTTCTTGTACAAAGTTTTGAAAACAGGAAACAAAGTGAAAGCAAGGTAGCATTTTTTGTAACTGAAAGTGACTCAAAGTAAACAGACCCTTATATTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGTTTCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGAGGAAAATGTGGCAAAAGCATGCACAGGGATACCATTCAAGGGCTTATACAATTAGCGAAATCTGTGCTTGGTGTGGGTATTTACTACAGAACATTTGCTTCTGTGGTTTCAGATAAAGTAATCTTAACGTTTTGGGTGCGTCTTTTTCAAGTAAAAGCCATTGAGACTTAAACTAGTTTGTTTTGCAAGCATAGATCAGTTGGTTCCCCTTGAATGTTAGTTATTATGCCATTCAGGTGGGAAGTTTTGGTTATTTGTATTTGTATTGGATTGTGGGGGCCTTTTAATGAGAGGGGTGTTGAAAGTAACAAAGTGGTTTAGACATCAATAGAGGTGGTGCTTAATTATCAGATGTTGCGGTGCATTTCTGTGTGCATCACCTCGTTACCTTTGACTTGTTTTGAGAGTACCATGAGAATCTTGTAATTTCTTTCCTTCTAATTTTTGGTATTGTTGACCGGAAAATAACCAATCTCGTCATTTAATTATTG
Coding sequences of Glyma.19g168200
>Glyma.19g168200.1 sequence-type=CDS polypeptide=Glyma.19g168200.1.p locus=Glyma.19g168200 ID=Glyma.19g168200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCACAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTTGACGGAGACTCCGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGTTTCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGA

>Glyma.19g168200.2 sequence-type=CDS polypeptide=Glyma.19g168200.2.p locus=Glyma.19g168200 ID=Glyma.19g168200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCACAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTTGACGGAGACTCCGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGA

>Glyma.19g168200.3 sequence-type=CDS polypeptide=Glyma.19g168200.3.p locus=Glyma.19g168200 ID=Glyma.19g168200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGTTTCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGA
Predicted protein sequences of Glyma.19g168200
>Glyma.19g168200.1.p sequence-type=predicted peptide transcript=Glyma.19g168200.1 locus=Glyma.19g168200 ID=Glyma.19g168200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMASGFVKIKDIGGKRKFVQTFFLAPQEKGYFVMNDMFHFIDDGVMYPNLVPVASETIDTQPHLSASLAEPPVSDYGLEEEAREYANSVHIDDDPVDKYSLPEHQQQLQEELETEIVVEETSVQEASPPIHTVAHTIQEPPVALVEESFEEPPKKTYASILRVSKGLPVLSAAPKHAPHSFKSAPPPPELNHVAQPAVQQSSSASMYAPESGTEAAEEGYALEEDEVTSVYVRNLPANVTEVEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQSSPLQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGYQDGSDYTRLRGDGYLQRGSR*

>Glyma.19g168200.2.p sequence-type=predicted peptide transcript=Glyma.19g168200.2 locus=Glyma.19g168200 ID=Glyma.19g168200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMASGFVKIKDIGGKRKFVQTFFLAPQEKGYFVMNDMFHFIDDGVMYPNLVPVASETIDTQPHLSASLAEPPDYGLEEEAREYANSVHIDDDPVDKYSLPEHQQQLQEELETEIVVEETSVQEASPPIHTVAHTIQEPPVALVEESFEEPPKKTYASILRVSKGLPVLSAAPKHAPHSFKSAPPPPELNHVAQPAVQQSSSASMYAPESGTEAAEEGYALEEDEVTSVYVRNLPANVTEVEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQSSPLQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGYQDGSDYTRLRGDGYLQRGSR*

>Glyma.19g168200.3.p sequence-type=predicted peptide transcript=Glyma.19g168200.3 locus=Glyma.19g168200 ID=Glyma.19g168200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASGFVKIKDIGGKRKFVQTFFLAPQEKGYFVMNDMFHFIDDGVMYPNLVPVASETIDTQPHLSASLAEPPVSDYGLEEEAREYANSVHIDDDPVDKYSLPEHQQQLQEELETEIVVEETSVQEASPPIHTVAHTIQEPPVALVEESFEEPPKKTYASILRVSKGLPVLSAAPKHAPHSFKSAPPPPELNHVAQPAVQQSSSASMYAPESGTEAAEEGYALEEDEVTSVYVRNLPANVTEVEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQSSPLQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGYQDGSDYTRLRGDGYLQRGSR*






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