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Report for Sequence Feature Glyma.19g166800

Feature Type:gene_model
Chromosome:Gm19
Start:42787961
stop:42800459
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g166800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04010.1AT phospholipid sterol acyl transferase 1 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0008374GO-mf O-acyltransferase activity EnsemblGenomesN/AIEA
GO:0008374GO-mf O-acyltransferase activity JGI N/AIEA
KOG2369 KOG Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase JGI N/AIEA
PTHR11440Panther LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED JGI N/AIEA
PTHR11440:SF7Panther PHOSPHOLIPID--STEROL O-ACYLTRANSFERASE JGI N/AIEA
PF02450PFAM Lecithin:cholesterol acyltransferase JGI N/AIEA
PWY-6803SoyCyc9 phosphatidylcholine acyl editing Plant Metabolic Network ISS
PWY-7416SoyCyc9 phospholipid remodeling (phosphatidylcholine, yeast) Plant Metabolic Network ISS
GN7V-57495SoyCyc9-rxn phospholipid:diacylglycerol acyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g166800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g166800
ParalogEvidenceComments
Glyma.03g165500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g166800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g35000 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g166800
>Glyma.19g166800.2 sequence-type=transcript locus=Glyma.19g166800 ID=Glyma.19g166800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAATGGTAAAAGTTCAGAAGAGGCCAGTAAAGTATAAGCAGAAAAGGGCCCGTCAGCTGGGATACAATTCAATTCAACGTTCAAAGGTCAAAAACCATTTCCGATTGGAATTTTCATTTATTCGCACACTCCCCAACTACCGGATGGTCAGAGTCACGTTTTTTTCATTCTTCCCTCCATCCCTCTCCCTCACAATGGCGAAAAACCCGTTACTCTGCTCGATCGTCCTCCTCGCCGTGCTCGCCGGAGCCACCTCAGACGACGGCGCCGAGCTCGACTACTCGAAGCTCTCCGGCATTATAATCCCCGGCTTCGCGTCCACTCAGCTCCGAGCATGGTCCATTCTCGACTGTCCTTACTCTCCGCTCGATTTCAACCCTCTCGACTTGGTCTGGCTCGACACAACCAAACTTCTTTCTGCTGTCAATTGCTGGCTTAAGTGCATGGTGTTGGATCCTTACAACCAGACAGATCATCCTGATTGCAAGTCCCGTCCGGATAGTGGTCTTTCTGGCATTACAGAACTTGATCCAGGTTATATAACAGGACCTCTTTCATCAGTTTGGAAAGAATGGATTAAGTGGTGTATTGAATTTGGCATAGAAGCTAATGCAATAATTGCTGTTCCGTATGATTGGAGATTGTCGCCCTCCAAGCTTGAAGAGCGGGACCTTTACTTTCATAAGCTAAAAATAACATTTGAAACTGCTTACAAACTTCGTGGTGGCCCCTCTTTAGTTTTTGCCCATTCATTGGGTAATCATGTTTTCCGTTATTTCTTGGAGTGGTTGAAGCTAGAGATTGCACCAAAACATTATATCCAGTGGCTGGATCAACATATTCATGCCTATTTTGCTGTTGGAGCTCCCCTTCTTGGTGCAATGGAAACCATTGAAGCAACACTTACTGGATTCACATTTGGTCTTCCTATATCTGAGGGAACAGCTCGGATGATGTTCAACTCCTTTGGTTCATCATTATGGATGATGCCTTTTTCCAAGTACTGTAGAACAGATAATAAATATTGGAAGCATTTTTCTGGGGGAAGGCAAGTGGGTCCACCAACATATCACTGTGATGAGCAGGAGTTTAAGACAAACTTATCTGGGTGGCCAACAAAAATAATCAACATTGAAATTCCCTCAACTCGTGAAATACCTGAGGCCAACTTGTCCAGCATGGAGTGCGGACTACCTACTCAATTATCTTTCTCAGCTCGGGAAATATCAGATGGCACCTTTTTCAAGGCAATTGAAGATTATGACCCAGACAGCAAGAGGCTCTTGTACCTGTTAGAGAAATCATATCTTGGCAATCCTGTTCTTAATCCCCTTACACCTTGGGACCGGCCACCAATAAAAAATGTATTCTGCATTTATGGGACTGATTCAAAGACAAAGGTTGGTTACTACTATGCTCCTAGCGGCAAGCCTTACCCTGATAACTGGATCATTACGGATGTCGTTTATGAGTTTGAAGGATCTCTAATCTCAAGGTCAGGGAATCTGGTTGAAGGGAACCCTGGAGCAATAAGTGGCGATGAGACGGTGCCATATCTCTCCCTTTCCTGGTGCAAAAACTGGCTTGGACCGAAAGTGAACATAACAAAAGCTCCACAGTCAGAGCATGATGGCTCAGATGTACAAATTAAATTGAATGTGGAACATCACCATGAAGAAGATATCGTTCCAAACATGACAAGATCACCAAGGGTGAAGTATATAACATATTATGAAGATTCTGAAAGTCTTCCTGGAAAGAGGACAGCAGTTTGGGAGCTTGATAAAGCAAATCACAGGAACATCGTTAGATCACCAGTGCTAATGAGGGAATTATGGCTTGAGATGTGGCATGATATCCATCCTGATGCAAAATCAAAGTTTGTAAAAAAAGCTAAGCGTGGTCCTTTAAGAGATGAGGACTGTTATTGGGATTATGGGAAAGCTCGTTGTGCATGGCCTGAGTACTGTGAATATAGGTATGTTTTTGGTGATGTTCACTTGGGACAAAGCTGCAGGTTGAGATATACTACAGCTGAATTGTTGTCGCATTATTTGTAAATAATAAGGATGACACGCTACATATGAATACCAGAATTACTCCTTCATACAACCATGACTTTTGGAGTTTGGCCATTCTTTGACATTGTATACTTGTGGGGGCACTGTATACAAGCAAATATTTTGTTTGCTGGTTTAGAAATTTGACTCAACTTCTGAACTCGTCTATTATCCACTTCACAATTTGCACGGTATTTCTTGGGCCAGATCGTAATCAATGTTGTACTATACTCTGTTACTAGCAGCGGACACTTCTCACCGATATATTTACTGGTGGCATCTGATATGCGTCTTCATATGCTCTGGAAAACGAATTTCAGGTTATTTGCCTTCTATTTGTTCAAACATGATTTGTACTGCTATTCTTGGTTAACCAAGTGATCACTTCCCACTTTGCCATCCATGATAAGTAATTGGCGAGAATTATGATGGATCTGTAGAGCTATATTGTTCAATTGGTTGATAGTTTTCATGATCTAGAAACATACAGGCTATAGTGATATACTGATATGCTAAATCCATTGTTAGAAAAAGTTGACATGGGAAGGGAGAATACAAATAGTGTAGATGACAGTAGTACGAAGCTGAAAACTTTTGTTCTCTGATTTCGTAACAATTACATTCTTTCTCTACATTTGCCAATGTCAACTACTTATCTCTTTACTTTAGATTGACACCATAAATATGTGATTAAACTTAAACCTCTGTCCGTTTAAGATGTATGATTCGAAAATTGATGATTATGTCTTAATGGTTCAGTTTGATGTACCCTTCCCAGGAACGGCTAAACAATTTTGTAACGTTTTGATAAGCTCGTTTGTGAATAAGATT
Coding sequences of Glyma.19g166800
>Glyma.19g166800.1 sequence-type=CDS polypeptide=Glyma.19g166800.1.p locus=Glyma.19g166800 ID=Glyma.19g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAAAAGTTCAGAAGAGGCCAGTAAAGTATAAGCAGAAAAGGGCCCGTCAGCTGGGATACAATTCAATTCAACGTTCAAAGGTCAAAAACCATTTCCGATTGGAATTTTCATTTATTCGCACACTCCCCAACTACCGGATGGTCAGAGTCACGTTTTTTTCATTCTTCCCTCCATCCCTCTCCCTCACAATGGCGAAAAACCCGTTACTCTGCTCGATCGTCCTCCTCGCCGTGCTCGCCGGAGCCACCTCAGACGACGGCGCCGAGCTCGACTACTCGAAGCTCTCCGGCATTATAATCCCCGGCTTCGCGTCCACTCAGCTCCGAGCATGGTCCATTCTCGACTGTCCTTACTCTCCGCTCGATTTCAACCCTCTCGACTTGGTCTGGCTCGACACAACCAAACTTCTTTCTGCTGTCAATTGCTGGCTTAAGTGCATGGTGTTGGATCCTTACAACCAGACAGATCATCCTGATTGCAAGTCCCGTCCGGATAGTGGTCTTTCTGGCATTACAGAACTTGATCCAGGTTATATAACAGGACCTCTTTCATCAGTTTGGAAAGAATGGATTAAGTGGTGTATTGAATTTGGCATAGAAGCTAATGCAATAATTGCTGTTCCGTATGATTGGAGATTGTCGCCCTCCAAGCTTGAAGAGCGGGACCTTTACTTTCATAAGCTAAAAATAACATTTGAAACTGCTTACAAACTTCGTGGTGGCCCCTCTTTAGTTTTTGCCCATTCATTGGGTAATCATGTTTTCCGTTATTTCTTGGAGTGGTTGAAGCTAGAGATTGCACCAAAACATTATATCCAGTGGCTGGATCAACATATTCATGCCTATTTTGCTGTTGGAGCTCCCCTTCTTGGTGCAATGGAAACCATTGAAGCAACACTTACTGGATTCACATTTGGTCTTCCTATATCTGAGGGAACAGCTCGGATGATGTTCAACTCCTTTGGTTCATCATTATGGATGATGCCTTTTTCCAAGTACTGTAGAACAGATAATAAATATTGGAAGCATTTTTCTGGGGGAAGGCAAGTGGGTCCACCAACATATCACTGTGATGAGCAGGAGTTTAAGACAAACTTATCTGGGTGGCCAACAAAAATAATCAACATTGAAATTCCCTCAACTCGTGCATTTGATGCATATCCTTCATTCTCAGAAATACCTGAGGCCAACTTGTCCAGCATGGAGTGCGGACTACCTACTCAATTATCTTTCTCAGCTCGGGAAATATCAGATGGCACCTTTTTCAAGGCAATTGAAGATTATGACCCAGACAGCAAGAGGCTCTTGTACCTGTTAGAGAAATCATATCTTGGCAATCCTGTTCTTAATCCCCTTACACCTTGGGACCGGCCACCAATAAAAAATGTATTCTGCATTTATGGGACTGATTCAAAGACAAAGGTTGGTTACTACTATGCTCCTAGCGGCAAGCCTTACCCTGATAACTGGATCATTACGGATGTCGTTTATGAGTTTGAAGGATCTCTAATCTCAAGGTCAGGGAATCTGGTTGAAGGGAACCCTGGAGCAATAAGTGGCGATGAGACGGTGCCATATCTCTCCCTTTCCTGGTGCAAAAACTGGCTTGGACCGAAAGTGAACATAACAAAAGCTCCACAGTCAGAGCATGATGGCTCAGATGTACAAATTAAATTGAATGTGGAACATCACCATGAAGAAGATATCGTTCCAAACATGACAAGATCACCAAGGGTGAAGTATATAACATATTATGAAGATTCTGAAAGTCTTCCTGGAAAGAGGACAGCAGTTTGGGAGCTTGATAAAGCAAATCACAGGAACATCGTTAGATCACCAGTGCTAATGAGGGAATTATGGCTTGAGATGTGGCATGATATCCATCCTGATGCAAAATCAAAGTTTGTAAAAAAAGCTAAGCGTGGTCCTTTAAGAGATGAGGACTGTTATTGGGATTATGGGAAAGCTCGTTGTGCATGGCCTGAGTACTGTGAATATAGGTATGTTTTTGGTGATGTTCACTTGGGACAAAGCTGCAGGTTGAGATATACTACAGCTGAATTGTTGTCGCATTATTTGTAA

>Glyma.19g166800.2 sequence-type=CDS polypeptide=Glyma.19g166800.2.p locus=Glyma.19g166800 ID=Glyma.19g166800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAAAAGTTCAGAAGAGGCCAGTAAAGTATAAGCAGAAAAGGGCCCGTCAGCTGGGATACAATTCAATTCAACGTTCAAAGGTCAAAAACCATTTCCGATTGGAATTTTCATTTATTCGCACACTCCCCAACTACCGGATGGTCAGAGTCACGTTTTTTTCATTCTTCCCTCCATCCCTCTCCCTCACAATGGCGAAAAACCCGTTACTCTGCTCGATCGTCCTCCTCGCCGTGCTCGCCGGAGCCACCTCAGACGACGGCGCCGAGCTCGACTACTCGAAGCTCTCCGGCATTATAATCCCCGGCTTCGCGTCCACTCAGCTCCGAGCATGGTCCATTCTCGACTGTCCTTACTCTCCGCTCGATTTCAACCCTCTCGACTTGGTCTGGCTCGACACAACCAAACTTCTTTCTGCTGTCAATTGCTGGCTTAAGTGCATGGTGTTGGATCCTTACAACCAGACAGATCATCCTGATTGCAAGTCCCGTCCGGATAGTGGTCTTTCTGGCATTACAGAACTTGATCCAGGTTATATAACAGGACCTCTTTCATCAGTTTGGAAAGAATGGATTAAGTGGTGTATTGAATTTGGCATAGAAGCTAATGCAATAATTGCTGTTCCGTATGATTGGAGATTGTCGCCCTCCAAGCTTGAAGAGCGGGACCTTTACTTTCATAAGCTAAAAATAACATTTGAAACTGCTTACAAACTTCGTGGTGGCCCCTCTTTAGTTTTTGCCCATTCATTGGGTAATCATGTTTTCCGTTATTTCTTGGAGTGGTTGAAGCTAGAGATTGCACCAAAACATTATATCCAGTGGCTGGATCAACATATTCATGCCTATTTTGCTGTTGGAGCTCCCCTTCTTGGTGCAATGGAAACCATTGAAGCAACACTTACTGGATTCACATTTGGTCTTCCTATATCTGAGGGAACAGCTCGGATGATGTTCAACTCCTTTGGTTCATCATTATGGATGATGCCTTTTTCCAAGTACTGTAGAACAGATAATAAATATTGGAAGCATTTTTCTGGGGGAAGGCAAGTGGGTCCACCAACATATCACTGTGATGAGCAGGAGTTTAAGACAAACTTATCTGGGTGGCCAACAAAAATAATCAACATTGAAATTCCCTCAACTCGTGAAATACCTGAGGCCAACTTGTCCAGCATGGAGTGCGGACTACCTACTCAATTATCTTTCTCAGCTCGGGAAATATCAGATGGCACCTTTTTCAAGGCAATTGAAGATTATGACCCAGACAGCAAGAGGCTCTTGTACCTGTTAGAGAAATCATATCTTGGCAATCCTGTTCTTAATCCCCTTACACCTTGGGACCGGCCACCAATAAAAAATGTATTCTGCATTTATGGGACTGATTCAAAGACAAAGGTTGGTTACTACTATGCTCCTAGCGGCAAGCCTTACCCTGATAACTGGATCATTACGGATGTCGTTTATGAGTTTGAAGGATCTCTAATCTCAAGGTCAGGGAATCTGGTTGAAGGGAACCCTGGAGCAATAAGTGGCGATGAGACGGTGCCATATCTCTCCCTTTCCTGGTGCAAAAACTGGCTTGGACCGAAAGTGAACATAACAAAAGCTCCACAGTCAGAGCATGATGGCTCAGATGTACAAATTAAATTGAATGTGGAACATCACCATGAAGAAGATATCGTTCCAAACATGACAAGATCACCAAGGGTGAAGTATATAACATATTATGAAGATTCTGAAAGTCTTCCTGGAAAGAGGACAGCAGTTTGGGAGCTTGATAAAGCAAATCACAGGAACATCGTTAGATCACCAGTGCTAATGAGGGAATTATGGCTTGAGATGTGGCATGATATCCATCCTGATGCAAAATCAAAGTTTGTAAAAAAAGCTAAGCGTGGTCCTTTAAGAGATGAGGACTGTTATTGGGATTATGGGAAAGCTCGTTGTGCATGGCCTGAGTACTGTGAATATAGGTATGTTTTTGGTGATGTTCACTTGGGACAAAGCTGCAGGTTGAGATATACTACAGCTGAATTGTTGTCGCATTATTTGTAA
Predicted protein sequences of Glyma.19g166800
>Glyma.19g166800.1.p sequence-type=predicted peptide transcript=Glyma.19g166800.1 locus=Glyma.19g166800 ID=Glyma.19g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKVQKRPVKYKQKRARQLGYNSIQRSKVKNHFRLEFSFIRTLPNYRMVRVTFFSFFPPSLSLTMAKNPLLCSIVLLAVLAGATSDDGAELDYSKLSGIIIPGFASTQLRAWSILDCPYSPLDFNPLDLVWLDTTKLLSAVNCWLKCMVLDPYNQTDHPDCKSRPDSGLSGITELDPGYITGPLSSVWKEWIKWCIEFGIEANAIIAVPYDWRLSPSKLEERDLYFHKLKITFETAYKLRGGPSLVFAHSLGNHVFRYFLEWLKLEIAPKHYIQWLDQHIHAYFAVGAPLLGAMETIEATLTGFTFGLPISEGTARMMFNSFGSSLWMMPFSKYCRTDNKYWKHFSGGRQVGPPTYHCDEQEFKTNLSGWPTKIINIEIPSTRAFDAYPSFSEIPEANLSSMECGLPTQLSFSAREISDGTFFKAIEDYDPDSKRLLYLLEKSYLGNPVLNPLTPWDRPPIKNVFCIYGTDSKTKVGYYYAPSGKPYPDNWIITDVVYEFEGSLISRSGNLVEGNPGAISGDETVPYLSLSWCKNWLGPKVNITKAPQSEHDGSDVQIKLNVEHHHEEDIVPNMTRSPRVKYITYYEDSESLPGKRTAVWELDKANHRNIVRSPVLMRELWLEMWHDIHPDAKSKFVKKAKRGPLRDEDCYWDYGKARCAWPEYCEYRYVFGDVHLGQSCRLRYTTAELLSHYL*

>Glyma.19g166800.2.p sequence-type=predicted peptide transcript=Glyma.19g166800.2 locus=Glyma.19g166800 ID=Glyma.19g166800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKVQKRPVKYKQKRARQLGYNSIQRSKVKNHFRLEFSFIRTLPNYRMVRVTFFSFFPPSLSLTMAKNPLLCSIVLLAVLAGATSDDGAELDYSKLSGIIIPGFASTQLRAWSILDCPYSPLDFNPLDLVWLDTTKLLSAVNCWLKCMVLDPYNQTDHPDCKSRPDSGLSGITELDPGYITGPLSSVWKEWIKWCIEFGIEANAIIAVPYDWRLSPSKLEERDLYFHKLKITFETAYKLRGGPSLVFAHSLGNHVFRYFLEWLKLEIAPKHYIQWLDQHIHAYFAVGAPLLGAMETIEATLTGFTFGLPISEGTARMMFNSFGSSLWMMPFSKYCRTDNKYWKHFSGGRQVGPPTYHCDEQEFKTNLSGWPTKIINIEIPSTREIPEANLSSMECGLPTQLSFSAREISDGTFFKAIEDYDPDSKRLLYLLEKSYLGNPVLNPLTPWDRPPIKNVFCIYGTDSKTKVGYYYAPSGKPYPDNWIITDVVYEFEGSLISRSGNLVEGNPGAISGDETVPYLSLSWCKNWLGPKVNITKAPQSEHDGSDVQIKLNVEHHHEEDIVPNMTRSPRVKYITYYEDSESLPGKRTAVWELDKANHRNIVRSPVLMRELWLEMWHDIHPDAKSKFVKKAKRGPLRDEDCYWDYGKARCAWPEYCEYRYVFGDVHLGQSCRLRYTTAELLSHYL*






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