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Report for Sequence Feature Glyma.19g165400

Feature Type:gene_model
Chromosome:Gm19
Start:42633659
stop:42635685
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g165400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54690.1AT Sugar isomerase (SIS) family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006183GO-bp GTP biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:1901135GO-bp carbohydrate derivative metabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003938GO-mf IMP dehydrogenase activity EnsemblGenomesN/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding JGI N/AIEA
GO:0030554GO-mf adenyl nucleotide binding JGI N/AIEA
GO:0097367GO-mf carbohydrate derivative binding EnsemblGenomesN/AIEA
PTHR10937Panther GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING JGI N/AIEA
PF00571PFAM CBS domain JGI N/AIEA
PF01380PFAM SIS domain JGI N/AIEA
PWY-1269SoyCyc9 CMP-3-deoxy-D-manno-octulosonate biosynthesis Plant Metabolic Network ISS
GN7V-54772SoyCyc9-rxn arabinose-5-phosphate isomerase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g165400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g165400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g34860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g165400
>Glyma.19g165400.1 sequence-type=CDS polypeptide=Glyma.19g165400.1.p locus=Glyma.19g165400 ID=Glyma.19g165400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTCTCTCCCTGTGCCCGCATTTCCATCCAAACACTGCCTTGACGAGAGCAGCCACATTGACGAAGCCACCCTCTCGGCGCTATTCAAGTCGCAGCAGAGCCACCTGAACTTCTTCTTCGACCACATCGACCACTCCCAAACCCTAGCCTTCACGCGCGCGCTCCTCAATGCCGCCGGCACCGTCTTCTTCACCGGCGTCGGAAAATCCGGCTTCGTCGCGCACAAGATCTCGCAGACGCTCGTCTCTCTGGGCGTTCGCTCCGCGTTCCTCTCGCCGGTGGACGCTCTCCACGGCGACATTGGAATCCTCACCAATCGCGATGTGCTCATCCTCCTCAGCAAGTCCGGCGCCACCGAGGAGCTCCTCCGCCTTGTGCCGTGTGCGAGGGCCAAAGGCGCGCTCCTCATCGCGCTCACCTCCGTTGAAGGCAACGCGCTCGCCGCGGCGTGCGACATGTCCGTGCATTTGCCGCTCCAGAGAGAGCTCTGTCCGTTCAACCTCGCGCCGGTGACATCCACCGCTATTCAAATGGTGTTCGGCGACACCGTCGCCATCGCGCTCATGGAGGCGAGGAATCTCACCAAGGAGGAGTACGCCGCGAACCATCCCGCCGGCAAGATCGGGAAGAGCCTCATCTTCAAGGTGAAGGATGTGATGAAGAAACAGGACGAGCTTCCAATTTGCAGAGAATCGGATTTGATTATGGATCAGCTCGTGGAACTCACAACTAAAGGATGCGGATGCCTCCTCGTTATCGGTGACGGTTACCGTCTGATCGGAACGTTCACCGACGGTGATCTCCGTCGTACTCTCCGAGCCAGCGGAGAAGCCATTTTCAAACTCACTGTTGGGCAAATGTGCAACAGGAATCCGAGAACTATTGGTCCGGAGGCAATGGCGGTGGATGCGATGAAGAAGATGGAGGCACCTCCATCGCCGGTTCAGTTTTTGCCTGTGATAAACGATGAAAGTATCTTGATTGGGATTGTGACCTTGCATGGTTTGGTTTCAGCTGGCTTGTGA
Predicted protein sequences of Glyma.19g165400
>Glyma.19g165400.1.p sequence-type=predicted peptide transcript=Glyma.19g165400.1 locus=Glyma.19g165400 ID=Glyma.19g165400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSLPVPAFPSKHCLDESSHIDEATLSALFKSQQSHLNFFFDHIDHSQTLAFTRALLNAAGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDIGILTNRDVLILLSKSGATEELLRLVPCARAKGALLIALTSVEGNALAAACDMSVHLPLQRELCPFNLAPVTSTAIQMVFGDTVAIALMEARNLTKEEYAANHPAGKIGKSLIFKVKDVMKKQDELPICRESDLIMDQLVELTTKGCGCLLVIGDGYRLIGTFTDGDLRRTLRASGEAIFKLTVGQMCNRNPRTIGPEAMAVDAMKKMEAPPSPVQFLPVINDESILIGIVTLHGLVSAGL*






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