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Report for Sequence Feature Glyma.19g160800

Feature Type:gene_model
Chromosome:Gm19
Start:42148525
stop:42153817
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g160800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02610.1AT Aldolase-type TIM barrel family protein JGI N/AIEA
GO:0000105GO-bp histidine biosynthetic process JGI N/AIEA
GO:0000162GO-bp tryptophan biosynthetic process EnsemblGenomesN/AIEA
GO:0006568GO-bp tryptophan metabolic process EnsemblGenomesN/AIEA
GO:0006568GO-bp tryptophan metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004834GO-mf tryptophan synthase activity EnsemblGenomesN/AIEA
GO:0004834GO-mf tryptophan synthase activity JGI N/AIEA
GO:0016765GO-mf transferase activity, transferring alkyl or aryl (other than methyl) groups JGI N/AIEA
KOG4175 KOG Tryptophan synthase alpha chain JGI N/AIEA
PTHR10314Panther SER/THR DEHYDRATASE, TRP SYNTHASE JGI N/AIEA
PTHR10314:SF4Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00290PFAM Tryptophan synthase alpha chain JGI N/AIEA
TRPSYN-PWYSoyCyc9 L-tryptophan biosynthesis Plant Metabolic Network ISS
GN7V-67564SoyCyc9-rxn tryptophan synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.19g160800
LocusGene SymbolProtein Name
TSA tryptophan synthase alpha chain

Expression Patterns of Glyma.19g160800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g160800 not represented in the dataset
Glyma.19g160800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g160800
ParalogEvidenceComments
Glyma.03g158400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g160800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g34350 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g160800
>Glyma.19g160800.2 sequence-type=transcript locus=Glyma.19g160800 ID=Glyma.19g160800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTAAATAATATTAGGGAAGGTTGGACTTGCAAGTTGCAACAGAGACAGAAAAAAGGACTCAATCACGAAGCAGAAGAAACCCAATAAGAAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGAAAAATAAGCTTTTAAGAGCTCGAACTTATAATAGTTGTTGTCATCATAGATATTGGATTCAATAAAATGTGGTTCAATTATGATTGGATTTCTCAGTTACTGAAATAAATGTCCCATATGAATTTCATCTCCTCACTCCATTGAG

>Glyma.19g160800.3 sequence-type=transcript locus=Glyma.19g160800 ID=Glyma.19g160800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTAAATAATATTAGGGAAGGTTGGACTTGCAAGTTGCAACAGAGACAGAAAAAAGGACTCAATCACGAAGCAGAAGAAACCCAATAAGTATTTCTCATTTTTATGGCTCTTGCCCTGAAGTCAAGTTGCTTATTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGAAAAATAAGCTTTTAAGAGCTCGAACTTATAATAGTTGTTGTCATCATAGATATTGGATTCAATAAAATGTGGTTCAATTATGATTGGATTTCTCAGTTACTGAAATAAATGTCCCATATGAATTTCATCTCCTCACTCCATTGAG

>Glyma.19g160800.4 sequence-type=transcript locus=Glyma.19g160800 ID=Glyma.19g160800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAACAGAGACAGAAAAAAGGACTCAATCACGAAGCAGAAGAAACCCAATAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGAAAAATAAGCTTTTAAGAGCTCGAACTTATAATAGTTGTTGTCATCATAGATATTGGATTCAATAAAATGTGGTTCAATTATGATTGGATTTCTCAGTTACTGAAATAAATGTCCCATATGAATTTCATCTCCTC
Coding sequences of Glyma.19g160800
>Glyma.19g160800.1 sequence-type=CDS polypeptide=Glyma.19g160800.1.p locus=Glyma.19g160800 ID=Glyma.19g160800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTGCCCTGAAGTCAAGTTGCTTATTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGA

>Glyma.19g160800.2 sequence-type=CDS polypeptide=Glyma.19g160800.2.p locus=Glyma.19g160800 ID=Glyma.19g160800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGA

>Glyma.19g160800.3 sequence-type=CDS polypeptide=Glyma.19g160800.3.p locus=Glyma.19g160800 ID=Glyma.19g160800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTGCCCTGAAGTCAAGTTGCTTATTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGA

>Glyma.19g160800.4 sequence-type=CDS polypeptide=Glyma.19g160800.4.p locus=Glyma.19g160800 ID=Glyma.19g160800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGA
Predicted protein sequences of Glyma.19g160800
>Glyma.19g160800.1.p sequence-type=predicted peptide transcript=Glyma.19g160800.1 locus=Glyma.19g160800 ID=Glyma.19g160800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALALKSSCLLQLKKPEAGFNVCFSSKKAIISVKRYTPVAAIRIMDAVGLSATFTRLKKEGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAKGTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAALP*

>Glyma.19g160800.2.p sequence-type=predicted peptide transcript=Glyma.19g160800.2 locus=Glyma.19g160800 ID=Glyma.19g160800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAVGLSATFTRLKKEGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAKGTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAALP*

>Glyma.19g160800.3.p sequence-type=predicted peptide transcript=Glyma.19g160800.3 locus=Glyma.19g160800 ID=Glyma.19g160800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALALKSSCLLQLKKPEAGFNVCFSSKKAIISVKRYTPVAAIRIMDAVGLSATFTRLKKEGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAKGTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAALP*

>Glyma.19g160800.4.p sequence-type=predicted peptide transcript=Glyma.19g160800.4 locus=Glyma.19g160800 ID=Glyma.19g160800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAVGLSATFTRLKKEGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAKGTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAALP*






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