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Report for Sequence Feature Glyma.19g158200

Feature Type:gene_model
Chromosome:Gm19
Start:41890196
stop:41893193
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g158200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03110.1AT Transducin/WD40 repeat-like superfamily protein JGI N/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0030488GO-bp tRNA methylation EnsemblGenomesN/AIEA
GO:0036265GO-bp RNA (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0106004GO-bp tRNA (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0043527GO-cc tRNA methyltransferase complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008176GO-mf tRNA (guanine-N7-)-methyltransferase activity EnsemblGenomesN/AIEA
KOG3914 KOG WD repeat protein WDR4 JGI N/AIEA
PTHR16288Panther WD40 REPEAT PROTEIN 4 JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.19g158200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g158200 not represented in the dataset
Glyma.19g158200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g158200
ParalogEvidenceComments
Glyma.03g155900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g158200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g34071 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g158200
>Glyma.19g158200.1 sequence-type=CDS polypeptide=Glyma.19g158200.1.p locus=Glyma.19g158200 ID=Glyma.19g158200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATCCGAATCCAAGAACGACACCGAAGTCGCTCCGGCCTTAATCGCCGTTCACCCCGACCAATCCTCCGTCGCCGTCGCTGTGGGCCCGCACCTCCGCGTCTTCGACCTCCTTAGCGGTTCTGCAGCTTCTTTAACCGACGATTCTGATTGCGCCCCGCTCCATAAGAACAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTGTCCGCCGGTGACGATAAAACAGTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACCGTGTCCTCCGAGAAGAGAGTTACTGCAGTTGCAATTAGCAACGACGGAACATTCGTGTGCTTCGCCGACAAATTCGGCGTTGTTTGGGTTGTGGATGTTGATCCTCCGTTACACGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGTTTTATTTTAAGCGCCGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCCAGAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATTCCACAGTTCGATTGTGGAATATTGACTCTGGAGCACTTCTAGATACTTGTGAGGTTGCAATCAAGGCAGGGCTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATGGCCATGCTGTTATTGATTTATGCACTGTCCTGGATGGTTTGATTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGCTGAGTTGCAATGTTTGTGCACAAACTCTTTCTTTTGCCAAGGTGGTTTCTGTTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCCTCTATAAGGAAATTGTGGATGGTTACAGGTGTCTCTGGTCTACCTGGTTGTAATTATCTCTCTTTGGCTCGTGTGCGAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCCGGGAGATGATAACATACCCGGGGGAGAAAAACTACTAGAAACGCTGCAAGGATCTGCATCCGTTGATGACAGTGCTTTTCTAGCAACAGCTGAAGCTGTCAAAACAGCAATGTGCAACCTATTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATATAGGAAGAAAAGCAGAAATGATAGAAAACTAAAGGGCTAG
Predicted protein sequences of Glyma.19g158200
>Glyma.19g158200.1.p sequence-type=predicted peptide transcript=Glyma.19g158200.1 locus=Glyma.19g158200 ID=Glyma.19g158200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESESKNDTEVAPALIAVHPDQSSVAVAVGPHLRVFDLLSGSAASLTDDSDCAPLHKNNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCITTVSSEKRVTAVAISNDGTFVCFADKFGVVWVVDVDPPLHDKKPAPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPQKPLNGAHQIQSFCLGHTEFVSCLAFIQAQECPQGLLLSGSGDSTVRLWNIDSGALLDTCEVAIKAGLLESNGKAEEHGHAVIDLCTVLDGLIVAVAIQSLQGIVLLSCNVCAQTLSFAKVVSVAGEAFVPTCLGSSPSIRKLWMVTGVSGLPGCNYLSLARVRVISGIDVEQEPVVPGDDNIPGGEKLLETLQGSASVDDSAFLATAEAVKTAMCNLLIKKQYPSENREYRKKSRNDRKLKG*






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