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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.19g156300

Feature Type:gene_model
Chromosome:Gm19
Start:41686453
stop:41691111
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g156300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02790.1AT GTP-binding family protein JGI N/AIEA
GO:0015684GO-bp ferrous iron transport JGI N/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0015093GO-mf ferrous iron transmembrane transporter activity JGI N/AIEA
PTHR11089Panther GTP-BINDING PROTEIN-RELATED JGI N/AIEA
PTHR11089:SF38Panther JGI N/AIEA
PF01926PFAM 50S ribosome-binding GTPase JGI N/AIEA

Expression Patterns of Glyma.19g156300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g156300 not represented in the dataset
Glyma.19g156300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g156300
ParalogEvidenceComments
Glyma.03g153900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g156300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g33870 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g156300
>Glyma.19g156300.2 sequence-type=transcript locus=Glyma.19g156300 ID=Glyma.19g156300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTATTGCTTTAAGTATTTTCGCTGTCAGGCTAAAGTAGCTAACCCAATCTGTCTCGTAAGACAAAAAAAATCCACTCACTTCTCAATTGAGACGTCATCGGTTATCCTTCAGAAGTTCAGAATTATCGCAAAGCAAAGAAAGAAAAACTCGCGAGTGTTGTGGGCAGCGTGTTTGAAAACAGAAAAACGAAGAACAGAGAGTGATTAGTCGCATAGCACAGTGATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGAGACGTCCTGGAACTGACTGTAGAAGACAACTCCACATGGTGTTGGATGAATATGGATATTGTGATTATGAATGACATTATGGAAGGGAAAGGTGAATGCTCCCTCAAGACAATCTTTGGATCCTCGGGGCACACGAAACAAAGGATTTGAAGCCATGGATGCTTCTTGTTATTACCTTGTAATTTGGTCTCTTTTGCATCTGTCTGACTGTCTGTATAGAACCATTATGCCATGGGATGGGAGTTCGTAGTCATGATGCACATATGTTGTAGTATATACTTAATTGTTGTAGTGAGATGTTTCTTAAAATTAGGGCAGATGCTTGTTGCACTTTTGGGATGGTCTTCAGCTCATATCGTTTAACCAGATAAACATGACTATGCCAAAGCAATAAGACAGTAAGACGATTCAATAGTTACATATACTACCTGATCTTACCCCCAAGGCTGTTGTCTCCTTTGAACATGGGTTCTGATTATGGGTCAAGGATTAATATACTTAAATTAATTAGAGATAA
Coding sequences of Glyma.19g156300
>Glyma.19g156300.1 sequence-type=CDS polypeptide=Glyma.19g156300.1.p locus=Glyma.19g156300 ID=Glyma.19g156300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAAGTGA

>Glyma.19g156300.2 sequence-type=CDS polypeptide=Glyma.19g156300.2.p locus=Glyma.19g156300 ID=Glyma.19g156300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGAGACGTCCTGGAACTGA
Predicted protein sequences of Glyma.19g156300
>Glyma.19g156300.1.p sequence-type=predicted peptide transcript=Glyma.19g156300.1 locus=Glyma.19g156300 ID=Glyma.19g156300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVQLSSLWVPNSPPIPQHFVPNRGRFSASALSSQSPTIQIIGVGGPSWRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLADFRKGKFGWTALERPPK*

>Glyma.19g156300.2.p sequence-type=predicted peptide transcript=Glyma.19g156300.2 locus=Glyma.19g156300 ID=Glyma.19g156300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVQLSSLWVPNSPPIPQHFVPNRGRFSASALSSQSPTIQIIGVGGPSWRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLADFRKETSWN*






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