SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.19g155700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.19g155700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.19g155700

Feature Type:gene_model
Chromosome:Gm19
Start:41585005
stop:41594290
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g155700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63150.1AT MIRO-related GTP-ase 2 JGI N/AIEA
GO:0007005GO-bp mitochondrion organization EnsemblGenomesN/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005741GO-cc mitochondrial outer membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031307GO-cc integral component of mitochondrial outer membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG1707 KOG Predicted Ras related/Rac-GTP binding protein JGI N/AIEA
PTHR24072Panther RHO FAMILY GTPASE JGI N/AIEA
PTHR24072:SF12Panther RHO-RELATED GTP-BINDING PROTEIN RHOH JGI N/AIEA
PF08355PFAM EF hand associated JGI N/AIEA
PF08356PFAM EF hand associated JGI N/AIEA
PF08477PFAM Miro-like protein JGI N/AIEA
GN7V-68179SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.19g155700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g155700 not represented in the dataset
Glyma.19g155700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g155700
ParalogEvidenceComments
Glyma.03g153300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g155700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g33810 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g155700
>Glyma.19g155700.2 sequence-type=transcript locus=Glyma.19g155700 ID=Glyma.19g155700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTATGAACATAGTTGGAACCTTTAATTTATTGATGCTTTATTATTTCCCGTTCACGCTCTGTTACCTGGCATCGCATCAATGGCGAATCACTCAAGCAGCTTCGGCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGCGACCGCTCCACCGGAAAATCGAGCCTGATAGCCGCCATAGCGACGGAGTCATTCGCCGAGGCCGTTCCGCCGGTCCTTCCGCCCACCCTCCTGGCCCCTGATTTGTACCCCGACACCGTTCCTCTCACCGTCGTTGACACACCTTCCAGCTTGGAGAAGCAGAGAAAGCGTAATGAGGAATTGAAAGCAGCTGACGTTGTGGTGTTAACCTATGCTTGCAATGACACCGCGTCGTTTTCGCGGTTGAGTTCTTACTGGTTCCCGGAGCTGCAGAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGTGTGTCATGACACAGCTCCTGCAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACGCAATACCAGGTACCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTTCATCCGATAGATCCTTTGTATGATCATGAAAGTCAAGCTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTTAATGACACAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAATCCTCTGAAATAGCAGGAGTCAAAAGGGTTGTACAGCAGAAAGTACCTGAAGGATTCAACTCACATGGTCTTACTTTTCCTGGATTTATTTATGTCCACAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTCATGGATGATTTCCTTCCTGTTCCATCTAAGCATGCTTTCGATCAGGATCGAGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCACCAGAAAGTCCATGGGATGATGCTCTATATAAGGATGCTGCTGAGAGAACTAACATGGGTTACATATCTCTTAATGGATTCCTGGCGCAGTGGGTCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCAGCTGCTGCTCTTCGTGTTACCCGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAAGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACTGTTGAGAGGTTTGCAGCAAATTCCATTGAATTAATAGGGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTGAAGTATCGAATGTTTTGTCAAATAAGGGTTATTTGGCAGCATGTGATGTAGCTGTTTTTGTCTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCCGCAAAGGATGATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGTTACTGAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACCATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTTAAAAAGAATTCCTCTGGTTAGTCATCAAGAAAATTTATAATGGCAGAGCTGACTTAAATTAACTGTTGAATTCGTGTTCAGTATTGGGCACACTAATCTTGGTAACTTTAAGTTAGAATATATTTTTTGTACAGTGTTACTAATTTCATTTATTTTTCTTGCTATATTGGCTTCATATATAGCTGCCAAAATATGATTGTGGTCCGTGTCTGTTTTCAATTTGATTTTCATTGTGTATATTTCAAGTTTAAGTTACATTGACTAGATGTAATTACACTGATGTCTCTTGTGGAGTTTGTTTGGAATTAAATATTTCAGTACTTATTTGATTTGTATAATATGAAATAATTTAATCCTGAAACCTTTTCAGTCAAGTACAGATGAAATTCGATC
Coding sequences of Glyma.19g155700
>Glyma.19g155700.1 sequence-type=CDS polypeptide=Glyma.19g155700.1.p locus=Glyma.19g155700 ID=Glyma.19g155700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAATCACTCAAGCAGCTTCGGCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGCGACCGCTCCACCGGAAAATCGAGCCTGATAGCCGCCATAGCGACGGAGTCATTCGCCGAGGCCGTTCCGCCGGTCCTTCCGCCCACCCTCCTGGCCCCTGATTTGTACCCCGACACCGTTCCTCTCACCGTCGTTGACACACCTTCCAGCTTGGAGAAGCAGAGAAAGCGTAATGAGGAATTGAAAGCAGCTGACGTTGTGGTGTTAACCTATGCTTGCAATGACACCGCGTCGTTTTCGCGGTTGAGTTCTTACTGGTTCCCGGAGCTGCAGAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGTGTGTCATGACACAGCTCCTGCAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACGCAATACCAGGTACCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTTCATCCGATAGATCCTTTGTATGATCATGAAAGTCAAGCTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTTAATGACACAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAATCCTCTGAAATAGCAGGAGTCAAAAGGGTTGTACAGCAGAAAGTACCTGAAGGATTCAACTCACATGGTCTTACTTTTCCTGGATTTATTTATGTCCACAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTCATGGATGATTTCCTTCCTGTTCCATCTAAGCATGCTTTCGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTGTTAGATACAGATAAAGATCGAGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCACCAGAAAGTCCATGGGATGATGCTCTATATAAGGATGCTGCTGAGAGAACTAACATGGGTTACATATCTCTTAATGGATTCCTGGCGCAGTGGGTCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCAGCTGCTGCTCTTCGTGTTACCCGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAAGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACTGTTGAGAGGTTTGCAGCAAATTCCATTGAATTAATAGGGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTGAAGTATCGAATGTTTTGTCAAATAAGGGTTATTTGGCAGCATGTGATGTAGCTGTTTTTGTCTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCCGCAAAGGATGATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGTTACTGAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACCATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTTAAAAAGAATTCCTCTGGTTAG

>Glyma.19g155700.2 sequence-type=CDS polypeptide=Glyma.19g155700.2.p locus=Glyma.19g155700 ID=Glyma.19g155700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAATCACTCAAGCAGCTTCGGCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGCGACCGCTCCACCGGAAAATCGAGCCTGATAGCCGCCATAGCGACGGAGTCATTCGCCGAGGCCGTTCCGCCGGTCCTTCCGCCCACCCTCCTGGCCCCTGATTTGTACCCCGACACCGTTCCTCTCACCGTCGTTGACACACCTTCCAGCTTGGAGAAGCAGAGAAAGCGTAATGAGGAATTGAAAGCAGCTGACGTTGTGGTGTTAACCTATGCTTGCAATGACACCGCGTCGTTTTCGCGGTTGAGTTCTTACTGGTTCCCGGAGCTGCAGAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGTGTGTCATGACACAGCTCCTGCAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACGCAATACCAGGTACCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTTCATCCGATAGATCCTTTGTATGATCATGAAAGTCAAGCTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTTAATGACACAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAATCCTCTGAAATAGCAGGAGTCAAAAGGGTTGTACAGCAGAAAGTACCTGAAGGATTCAACTCACATGGTCTTACTTTTCCTGGATTTATTTATGTCCACAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTCATGGATGATTTCCTTCCTGTTCCATCTAAGCATGCTTTCGATCAGGATCGAGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCACCAGAAAGTCCATGGGATGATGCTCTATATAAGGATGCTGCTGAGAGAACTAACATGGGTTACATATCTCTTAATGGATTCCTGGCGCAGTGGGTCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCAGCTGCTGCTCTTCGTGTTACCCGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAAGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACTGTTGAGAGGTTTGCAGCAAATTCCATTGAATTAATAGGGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTGAAGTATCGAATGTTTTGTCAAATAAGGGTTATTTGGCAGCATGTGATGTAGCTGTTTTTGTCTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCCGCAAAGGATGATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGTTACTGAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACCATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTTAAAAAGAATTCCTCTGGTTAG
Predicted protein sequences of Glyma.19g155700
>Glyma.19g155700.1.p sequence-type=predicted peptide transcript=Glyma.19g155700.1 locus=Glyma.19g155700 ID=Glyma.19g155700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANHSSSFGGRSGVRVVVAGDRSTGKSSLIAAIATESFAEAVPPVLPPTLLAPDLYPDTVPLTVVDTPSSLEKQRKRNEELKAADVVVLTYACNDTASFSRLSSYWFPELQKLEVKVPVIVVGCKLDLRDESQQVSLECVMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPIDPLYDHESQALKDRCVRALRRIFVLCDRDMDEALNDTELNEFQVRCFNAPLQSSEIAGVKRVVQQKVPEGFNSHGLTFPGFIYVHNMFLKKGRPETLWAVLRNFGYDNNLKLMDDFLPVPSKHAFDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWDDALYKDAAERTNMGYISLNGFLAQWVLMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATEKNVFQCYVFGSKNAGKSALLDSLLGRPFSNNYTPTTVERFAANSIELIGGTRKTLVLREIPESEVSNVLSNKGYLAACDVAVFVYDSSDEHSWKKSRDLLEKVGRQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTEELGIEAPIHVSMKLGDSSNVYHKIVNAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAVKKNSSG*

>Glyma.19g155700.2.p sequence-type=predicted peptide transcript=Glyma.19g155700.2 locus=Glyma.19g155700 ID=Glyma.19g155700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANHSSSFGGRSGVRVVVAGDRSTGKSSLIAAIATESFAEAVPPVLPPTLLAPDLYPDTVPLTVVDTPSSLEKQRKRNEELKAADVVVLTYACNDTASFSRLSSYWFPELQKLEVKVPVIVVGCKLDLRDESQQVSLECVMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPIDPLYDHESQALKDRCVRALRRIFVLCDRDMDEALNDTELNEFQVRCFNAPLQSSEIAGVKRVVQQKVPEGFNSHGLTFPGFIYVHNMFLKKGRPETLWAVLRNFGYDNNLKLMDDFLPVPSKHAFDQDRALRPAEVDKLFCTAPESPWDDALYKDAAERTNMGYISLNGFLAQWVLMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATEKNVFQCYVFGSKNAGKSALLDSLLGRPFSNNYTPTTVERFAANSIELIGGTRKTLVLREIPESEVSNVLSNKGYLAACDVAVFVYDSSDEHSWKKSRDLLEKVGRQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTEELGIEAPIHVSMKLGDSSNVYHKIVNAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAVKKNSSG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo