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Report for Sequence Feature Glyma.19g153500

Feature Type:gene_model
Chromosome:Gm19
Start:41375109
stop:41376924
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g153500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03330.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0000932GO-cc P-body EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005688GO-cc U6 snRNP EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:1990726GO-cc Lsm1-7-Pat1 complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG3448 KOG Predicted snRNP core protein JGI N/AIEA
PTHR13829Panther SNRNP CORE PROTEIN FAMILY MEMBER JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.19g153500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g153500 not represented in the dataset
Glyma.19g153500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g153500
ParalogEvidenceComments
Glyma.03g150900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g153500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g33600 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g153500
>Glyma.19g153500.1 sequence-type=CDS polypeptide=Glyma.19g153500.1.p locus=Glyma.19g153500 ID=Glyma.19g153500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTTCTTCTCGTACTTCAAGGATTTGGTGGGGAGGGAAGTAATCGTGGAGCTGAAGAACGATTTGGCCATCAAAGGAACATTGCATTCTGTTGATCAGTACCTCAACATCAAGCTCGAAAACACTAGCGTCGTCAATCAAGAAAAGTACCCTCACATGCTTTCTGTAAGAAACTGCTTCATCAGAGGTTCGGTAGTGAGATATGTGCAATTGCCTCCAGAAGGGGTGGACATTGAATTATTGCACGATGCCACAAGAAGAGAAGCCCGGGGCGGTTAG
Predicted protein sequences of Glyma.19g153500
>Glyma.19g153500.1.p sequence-type=predicted peptide transcript=Glyma.19g153500.1 locus=Glyma.19g153500 ID=Glyma.19g153500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFFSYFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG*






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