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Report for Sequence Feature Glyma.19g147200

Feature Type:gene_model
Chromosome:Gm19
Start:40809155
stop:40810570
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g147200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06760.1AT Late Embryogenesis Abundant 4-5 JGI N/AIEA
GO:0009790GO-bp embryo development JGI N/AIEA
GO:0009793GO-bp embryo development ending in seed dormancy EnsemblGenomesN/AIEA
GO:0031210GO-mf phosphatidylcholine binding EnsemblGenomesN/AIEA
GO:0048030GO-mf disaccharide binding EnsemblGenomesN/AIEA
GO:0070492GO-mf oligosaccharide binding EnsemblGenomesN/AIEA
PF03760PFAM Late embryogenesis abundant (LEA) group 1 JGI N/AIEA

Proteins Associated with Glyma.19g147200
LocusGene SymbolProtein Name
PM1 Late embryogenesis abundant protein 1 gene

Expression Patterns of Glyma.19g147200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g147200
ParalogEvidenceComments
Glyma.03g144400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g147200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g32920 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g147200
>Glyma.19g147200.1 sequence-type=CDS polypeptide=Glyma.19g147200.1.p locus=Glyma.19g147200 ID=Glyma.19g147200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGGAGGAAAGAAAGCGGGAGAGTCCATTAAGGAAACAGCTACAAACATTGGTGCTTCTGCCAAGGCTGGCATGGAGAAGACCAAGGCCACTGTCCAAGAGAAGGCAGAAAGAATGACAGCACGTGATCCGGTGCAAAAGGAGTTGGCAACCCAAAAGAAAGAGGCAAAGATGAACCAGGCGGAGCTGGACAAGCAGGCGGCGCGTCAGCATAACACGGCGGCCAAACAGTCCGCCACCACGGCTGGGCACATGGGACATGGCCACCACACCACCGGAACCGGGACTGGAACCGCCACGTATTCCACCACCGGGGAATATGGTCAGCCCATGGGGGCCCACCAGACGTCGGCAATGCCTGGCCATGGAACCGGGCAGCCCACGGGCCATGTCACCGAAGGAGTGGTGGGCTCACATCCCATTGGAACCAACAGAGGGCCGGGTGGGACCGCTACAGCTCATAATACCCGTGCGGGTGGAAAGCCGAATGATTATGGGTATGGGACTGGGGGTACTTAA
Predicted protein sequences of Glyma.19g147200
>Glyma.19g147200.1.p sequence-type=predicted peptide transcript=Glyma.19g147200.1 locus=Glyma.19g147200 ID=Glyma.19g147200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTGGT*






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