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Report for Sequence Feature Glyma.19g142400

Feature Type:gene_model
Chromosome:Gm19
Start:40338311
stop:40341438
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g142400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57610.1AT adenylosuccinate synthase JGI N/AIEA
GO:0006164GO-bp purine nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0006164GO-bp purine nucleotide biosynthetic process JGI N/AIEA
GO:0006167GO-bp AMP biosynthetic process EnsemblGenomesN/AIEA
GO:0044208GO-bp 'de novo' AMP biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0004019GO-mf adenylosuccinate synthase activity EnsemblGenomesN/AIEA
GO:0004019GO-mf adenylosuccinate synthase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1355 KOG Adenylosuccinate synthase JGI N/AIEA
PTHR11846Panther ADENYLOSUCCINATE SYNTHETASE JGI N/AIEA
PF00709PFAM Adenylosuccinate synthetase JGI N/AIEA
PWY-7219SoyCyc9 adenosine ribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY-7229SoyCyc9 superpathway of adenosine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-841SoyCyc9 superpathway of purine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
GN7V-56821SoyCyc9-rxn adenylosuccinate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g142400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g142400
ParalogEvidenceComments
Glyma.03g139200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g142400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g32410 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g142400
>Glyma.19g142400.2 sequence-type=transcript locus=Glyma.19g142400 ID=Glyma.19g142400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGCAGCCTTTGTGTTCGCGTCTTTCACTTTCTCTCTCTTGTCTCTTTGTATCGTGCGTGTGTGTTTAGCATTCACAATGAACAGCATCTCATCACTGACCCTTGATTCTCACGCAATATGCAACACTCAGCGCCCCATCTCCCTCCGCCAAGTTCGCCCCACTCGAAACGTCGTCGTATGCTCCGCGAAGCCCGTCGCGCCTCCCCCCACCAAGCTCGCTGCTGCCGACACCTCCGGCAGCCGCATCGGGGCGCTGAGCCAGGTCTCCGGCGTGCTAGGTTGCCAGTGGGGCGACGAGGGCAAAGGGAAACTCGTCGACATATTGGCCCAGCACTTCGAAATCGTTGCTCGCTGCCAGAAGGGAAAAAGTTTGCCCTACATCTTGTTCCTTCTGGTATTCTCAATGAGGATACTCTCTGTGTTATTGGGAATGGGGTTGTAGTGCACCTGCCGGGGTTGTTTAAAGAGATTGACGGTCTTGAATCAAATGGGGTCTCTTGCAAGGGAAGGATATTGATATCTGATCGCGCTCACCTGTTGTTTGATTTTCATCAAGTAGTGGATGGGCTAAGAGAAGCCGAGCTTGCTAAATCTTTCATTGGCACCACCAAGAGAGGCATTGGACCCTGCTACTCCAGCAAGGTTAACCGTAATGGCATCCGAGTGGGTGATTTGAGGCACATGGATACTTTCCCTCAGAAGCTTGATCTTATATTGTCAGATGCAGCATTGAGGTTCAAAGATTTTAACTATGGTCCAGATGTGCTCAGGGAAGAAGTTGAAAAATACAAGAGGTATGCCGAGAGGTTGGAGCCCTTTATTGCTGATACTGTGCTTGTCATGAATGATGCCATAGAACAAAAGAAGAAGATTTTGGTTGAAGGAGGACAAGCTACCATGTTGGACATTGATTTCGGAACTTATCCCTTTGTTACTTCTTCTAGCCCATCAGCAGGCGGGATATGCACTGGTCTTGGTATTGCTCCAAGGGTAGTTGGTGATTTAATAGGAGTGGTGAAGGCGTACACAACAAGAGTTGGTTCTGGTCCTTTTCCAACTGAAATTTTGGGTTCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGACGGTGTGGCTGGCTCGATATAGTTGCTCTGAAATACTCATGTCAGATCAATGGTTTCTCATCGTTGAATCTTACCAAGCTGGATGTTTTATCAGATCTTGAAGAAATACAGTTGGGTGTCTCTTACAAACTTGCTGATGGCACCCCAATCAAATCATTCCCTTCAGATCTCCGTCTTCTTGAGCAACTGAAGGTGGAATATGAAGTACTTCCTGGATGGAAATATGATATTTCTTCCATAAGAAACTATTCTGACCTTCCAAAAGCTGCTAGGCTGTATGTGGAAAGGATAGAAGAACTTGTGGGGGTCCCTATTCACTACATTGGTATTGGGCCAGGACGTGATGCTCTCATATACAAATGAGTTCACATTGGATTTGCATGCCTCTGTAGGTAAGTTGAGGCTTTTTGCGGTAGAGGTGTCGATTCCCGCTAAGTTTCAGTTTTTTTGGGATATAAACACATTTTTAGTGACTAGTGAGGATCAGCTACATGATGTATTATTATGTTGTTAGCCATCATCATTGGCATTTTGGGTTTTTATATGAATTTGATACAAGGTGTTTGCAGTCTAGTTATGCAATACTTGTCGGAATGATGAGTATGAATTAGATGTATGATGCTAACATCTGCCCTTGTCGTGGTGGTATTCATGTAGCGGAAAATAATGTTGTACTAGTAACCCACCCAAATGCTTTTAGCTTTCAACTATCTACAAAATTGCATCATGGTTTTGTTGCTCTATGC
Coding sequences of Glyma.19g142400
>Glyma.19g142400.1 sequence-type=CDS polypeptide=Glyma.19g142400.1.p locus=Glyma.19g142400 ID=Glyma.19g142400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACAGCATCTCATCACTGACCCTTGATTCTCACGCAATATGCAACACTCAGCGCCCCATCTCCCTCCGCCAAGTTCGCCCCACTCGAAACGTCGTCGTATGCTCCGCGAAGCCCGTCGCGCCTCCCCCCACCAAGCTCGCTGCTGCCGACACCTCCGGCAGCCGCATCGGGGCGCTGAGCCAGGTCTCCGGCGTGCTAGGTTGCCAGTGGGGCGACGAGGGCAAAGGGAAACTCGTCGACATATTGGCCCAGCACTTCGAAATCGTTGCTCGCTGCCAGGGTGGAGCTAATGCTGGGCATACTATCTATAATGCAGAAGGGAAAAAGTTTGCCCTACATCTTGTTCCTTCTGGTATTCTCAATGAGGATACTCTCTGTGTTATTGGGAATGGGGTTGTAGTGCACCTGCCGGGGTTGTTTAAAGAGATTGACGGTCTTGAATCAAATGGGGTCTCTTGCAAGGGAAGGATATTGATATCTGATCGCGCTCACCTGTTGTTTGATTTTCATCAAGTAGTGGATGGGCTAAGAGAAGCCGAGCTTGCTAAATCTTTCATTGGCACCACCAAGAGAGGCATTGGACCCTGCTACTCCAGCAAGGTTAACCGTAATGGCATCCGAGTGGGTGATTTGAGGCACATGGATACTTTCCCTCAGAAGCTTGATCTTATATTGTCAGATGCAGCATTGAGGTTCAAAGATTTTAACTATGGTCCAGATGTGCTCAGGGAAGAAGTTGAAAAATACAAGAGGTATGCCGAGAGGTTGGAGCCCTTTATTGCTGATACTGTGCTTGTCATGAATGATGCCATAGAACAAAAGAAGAAGATTTTGGTTGAAGGAGGACAAGCTACCATGTTGGACATTGATTTCGGAACTTATCCCTTTGTTACTTCTTCTAGCCCATCAGCAGGCGGGATATGCACTGGTCTTGGTATTGCTCCAAGGGTAGTTGGTGATTTAATAGGAGTGGTGAAGGCGTACACAACAAGAGTTGGTTCTGGTCCTTTTCCAACTGAAATTTTGGGTTCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGACGGTGTGGCTGGCTCGATATAGTTGCTCTGAAATACTCATGTCAGATCAATGGTTTCTCATCGTTGAATCTTACCAAGCTGGATGTTTTATCAGATCTTGAAGAAATACAGTTGGGTGTCTCTTACAAACTTGCTGATGGCACCCCAATCAAATCATTCCCTTCAGATCTCCGTCTTCTTGAGCAACTGAAGGTGGAATATGAAGTACTTCCTGGATGGAAATATGATATTTCTTCCATAAGAAACTATTCTGACCTTCCAAAAGCTGCTAGGCTGTATGTGGAAAGGATAGAAGAACTTGTGGGGGTCCCTATTCACTACATTGGTATTGGGCCAGGACGTGATGCTCTCATATACAAATGA

>Glyma.19g142400.2 sequence-type=CDS polypeptide=Glyma.19g142400.2.p locus=Glyma.19g142400 ID=Glyma.19g142400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAACACTCAGCGCCCCATCTCCCTCCGCCAAGTTCGCCCCACTCGAAACGTCGTCGTATGCTCCGCGAAGCCCGTCGCGCCTCCCCCCACCAAGCTCGCTGCTGCCGACACCTCCGGCAGCCGCATCGGGGCGCTGAGCCAGGTCTCCGGCGTGCTAGGTTGCCAGTGGGGCGACGAGGGCAAAGGGAAACTCGTCGACATATTGGCCCAGCACTTCGAAATCGTTGCTCGCTGCCAGAAGGGAAAAAGTTTGCCCTACATCTTGTTCCTTCTGGTATTCTCAATGAGGATACTCTCTGTGTTATTGGGAATGGGGTTGTAGTGCACCTGCCGGGGTTGTTTAAAGAGATTGACGGTCTTGAATCAAATGGGGTCTCTTGCAAGGGAAGGATATTGATATCTGATCGCGCTCACCTGTTGTTTGATTTTCATCAAGTAGTGGATGGGCTAAGAGAAGCCGAGCTTGCTAAATCTTTCATTGGCACCACCAAGAGAGGCATTGGACCCTGCTACTCCAGCAAGGTTAACCGTAATGGCATCCGAGTGGGTGATTTGAGGCACATGGATACTTTCCCTCAGAAGCTTGATCTTATATTGTCAGATGCAGCATTGAGGTTCAAAGATTTTAACTATGGTCCAGATGTGCTCAGGGAAGAAGTTGAAAAATACAAGAGGTATGCCGAGAGGTTGGAGCCCTTTATTGCTGATACTGTGCTTGTCATGAATGATGCCATAGAACAAAAGAAGAAGATTTTGGTTGAAGGAGGACAAGCTACCATGTTGGACATTGATTTCGGAACTTATCCCTTTGTTACTTCTTCTAGCCCATCAGCAGGCGGGATATGCACTGGTCTTGGTATTGCTCCAAGGGTAGTTGGTGATTTAATAGGAGTGGTGAAGGCGTACACAACAAGAGTTGGTTCTGGTCCTTTTCCAACTGAAATTTTGGGTTCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGACGGTGTGGCTGGCTCGATATAGTTGCTCTGAAATACTCATGTCAGATCAATGGTTTCTCATCGTTGAATCTTACCAAGCTGGATGTTTTATCAGATCTTGAAGAAATACAGTTGGGTGTCTCTTACAAACTTGCTGATGGCACCCCAATCAAATCATTCCCTTCAGATCTCCGTCTTCTTGAGCAACTGAAGGTGGAATATGAAGTACTTCCTGGATGGAAATATGATATTTCTTCCATAAGAAACTATTCTGACCTTCCAAAAGCTGCTAGGCTGTATGTGGAAAGGATAGAAGAACTTGTGGGGGTCCCTATTCACTACATTGGTATTGGGCCAGGACGTGATGCTCTCATATACAAATGA
Predicted protein sequences of Glyma.19g142400
>Glyma.19g142400.1.p sequence-type=predicted peptide transcript=Glyma.19g142400.1 locus=Glyma.19g142400 ID=Glyma.19g142400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNSISSLTLDSHAICNTQRPISLRQVRPTRNVVVCSAKPVAPPPTKLAAADTSGSRIGALSQVSGVLGCQWGDEGKGKLVDILAQHFEIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILISDRAHLLFDFHQVVDGLREAELAKSFIGTTKRGIGPCYSSKVNRNGIRVGDLRHMDTFPQKLDLILSDAALRFKDFNYGPDVLREEVEKYKRYAERLEPFIADTVLVMNDAIEQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGSGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYSCQINGFSSLNLTKLDVLSDLEEIQLGVSYKLADGTPIKSFPSDLRLLEQLKVEYEVLPGWKYDISSIRNYSDLPKAARLYVERIEELVGVPIHYIGIGPGRDALIYK*

>Glyma.19g142400.2.p sequence-type=predicted peptide transcript=Glyma.19g142400.2 locus=Glyma.19g142400 ID=Glyma.19g142400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQHSAPHLPPPSSPHSKRRRMLREARRASPHQARCCRHLRQPHRGAEPGLRRARLPVGRRGQRETRRHIGPALRNRCSLPEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILISDRAHLLFDFHQVVDGLREAELAKSFIGTTKRGIGPCYSSKVNRNGIRVGDLRHMDTFPQKLDLILSDAALRFKDFNYGPDVLREEVEKYKRYAERLEPFIADTVLVMNDAIEQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEILGSGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYSCQINGFSSLNLTKLDVLSDLEEIQLGVSYKLADGTPIKSFPSDLRLLEQLKVEYEVLPGWKYDISSIRNYSDLPKAARLYVERIEELVGVPIHYIGIGPGRDALIYK*






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