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Report for Sequence Feature Glyma.19g141500

Feature Type:gene_model
Chromosome:Gm19
Start:40274838
stop:40275859
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g141500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24180.1AT Thiamin diphosphate-binding fold (THDP-binding) superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0016624GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor EnsemblGenomesN/AIEA
GO:0016624GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor JGI N/AIEA
PTHR11516Panther PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR) JGI N/AIEA
PTHR11516:SF4Panther JGI N/AIEA
PF00676PFAM Dehydrogenase E1 component JGI N/AIEA
PWY-5173SoyCyc9 superpathway of acetyl-CoA biosynthesis Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PYRUVDEHYD-PWYSoyCyc9 pyruvate decarboxylation to acetyl CoA Plant Metabolic Network ISS
GN7V-60989SoyCyc9-rxn pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating) Plant Metabolic Network ISS

Expression Patterns of Glyma.19g141500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g141500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g32320 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g141500
>Glyma.19g141500.1 sequence-type=CDS polypeptide=Glyma.19g141500.1.p locus=Glyma.19g141500 ID=Glyma.19g141500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCCGCGCACCTTCTCCTCGGAGCTCCTCACCTTCTTCCGTGATATGGCCCTGATGCGGCGCATGAAGATTGCCGCGGACTCCCTCTACAAGGCCAAGCTCATCCGCGGCTTTTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGCTTCACAAAAATGGACTCCATCATCACCGCCTACTGCGACCACTGCACCTTCCTCGGCCGCGGCGGCACGCTCCCCGAGGTCTTCGCCGAGCTCATGGGCTGCAGGGATGGGTGCTCGAAGGGGAAGGGAGAGTGGGTTCTACGGTGGGCATGGGATTGTTGGGGCGCAGGTTCCGTTGCGGTGTGGGTTGGCGTTTGCGCAGAAGTACTCCAAGGATGAGAGTGTCACTTTTGCTATGTATGGAGATGGTGCTGCCAATCAGGGACAGCTCTTTGAGGAGGCGCTTAACATTGCTGCACTTTGGGATCTTCCTGCTATTTTGCTTTAG
Predicted protein sequences of Glyma.19g141500
>Glyma.19g141500.1.p sequence-type=predicted peptide transcript=Glyma.19g141500.1 locus=Glyma.19g141500 ID=Glyma.19g141500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMPRTFSSELLTFFRDMALMRRMKIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAASQKWTPSSPPTATTAPSSAAAARSPRSSPSSWAAGMGARRGRESGFYGGHGIVGAQVPLRCGLAFAQKYSKDESVTFAMYGDGAANQGQLFEEALNIAALWDLPAILL*






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