SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57550.2 | AT | guanylate kinase | JGI | N/A | IEA |
| GO:0006163 | GO-bp | purine nucleotide metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0046037 | GO-bp | GMP metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0046710 | GO-bp | GDP metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0004385 | GO-mf | guanylate kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG0707 | KOG | Guanylate kinase | JGI | N/A | IEA |
| PTHR23117 | Panther | GUANYLATE KINASE-RELATED | JGI | N/A | IEA |
| PTHR23117:SF1 | Panther | JGI | N/A | IEA | |
| PF00625 | PFAM | Guanylate kinase | JGI | N/A | IEA |
| PWY-7221 | SoyCyc9 | guanosine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7228 | SoyCyc9 | superpathway of guanosine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-841 | SoyCyc9 | superpathway of purine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-40631 | SoyCyc9-rxn | guanylate kinase | Plant Metabolic Network | ISS |
|
Glyma.19g141200 not represented in the dataset |
Glyma.19g141200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g138200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g32290 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g141200.2 sequence-type=transcript locus=Glyma.19g141200 ID=Glyma.19g141200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAACAGGTCCTGCTTGCTTGGCTCATAATCGAAAGCCACCCCTTTATGCTTTTCCGCCTACAAATATGACAACCTTCCTTACATTTTCTTCCAACTTTATCTTCCTCTTCTCTCATTTTTCATCTCACCCTTCCTCTATTTCCATCATTTCGTGACAACAACAACATAACCCTCTCGCCCCCAACACACACCTCTTCTTTTTAAGGGTTTATCTTAAACCAGGATTTTTGGCACTAATTTCTCTATGGGAGAAGCACCAGCATTGCTTGTTGATGACGTGCAGGATGGGGCTCTGAATGGCCTTGAATTGAAAAATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGATTTTGTCACTGCTCCACCTATATCAGGCCCTATAGAGATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAACATTCAATGCACTTGGCCAACTAACTTGGTATTGAAGAAATGGGACACATTGATAAGGCATTAGATTCACTTCTTAAACATTTTTTTAAGCATTCGGTAAGAACTTCTATAAGCATTCTTTGATTATTATGACTATTGAGTTGACTTGAGAGATGGCAATTGCTAAATTATTATTCCCTACATAGGCAATGAGATTACTTGTGTCTTTTGTGTGTCAAGGAAGGCAAAATATGGTGTACGTTTCTCTATTCCCCCCACCCCAAGATCTGTTATAGTAAGGGAATATGAAGGGGGCCTACAACATGAATACTTCAAATTCAAAGATGTCTGTCAGATATTAGGTGTTATACTAGGCATGGCTATTCATTGATTCAAGCCATATGTTTTACACATTAAATTTGTTGGATACATGTTTTATGTCATTACCATGTTCATTAGATTCTAACAGCTATATGGCGTTAGTTATGCTAACAACCATTTATTTTTGGCAACGACATATTCACTATGGAGGCTTTGCCCCATTTAACTCACCATTAGTGTTACATCCTCCAAAGGGCTCAGGAGTAGGGAGTGCTTTCAGCCCCACATAATGGCTGTGACACGAATCAATTTCGTATCTCTGAGCATTGAGACAGTCCAAGAGCCTTGTCAAGTTGATCAACCATTAGGTGGTCCAGAAACTATTTTTAAGTTTATAATTGCGTAAGGGTCTGGGCAGAACAGAACTGATAAAGATACTGTGATAATTGGACGCAGGCTCGAATAATTGAGGAATGATGATGATATAAAATTACTAAATACTATGTGAATTGAGCTCTCAGAAGAAAATTGTCGATAAAATTTTGTATAAAATAGTTAATTATGTGGGAAAGATGGTTTTTTTCTTATAAAAGAAAAGTTTAAGTGAGTTAGATCTCAAGAGTTTATCAGGAATAAGGTAGATATTAAGGCGTTCAAAGAATGTTTATAGAAGTTCTTACAGATTATTCACCAATAACATCTTCACATAATTAATGATAATCGAATTTACATTTTTTTGAGATATGAATATTTGTTTCTTATCAATATTTGTTTTAAAATTTTGAAACATTATACCGCTATAAAAAAAACATTATACCAAAATGTCATTCCTAATGAAGAATGATCAAATCAAACTTAGTCATACGTCACACAGAGAAGAGGTTGTGATGTAGCTAATTTATGGAATCGTATAATGTCTACCATTTAAAAGGAAAAGAAAAACGTTTTCTTCATGTGACACCTTCGACACTGTCAAGTAGCCTAAAGGTTTGGCTGGCTATGTAGATATTTCGGAATAAGTGGACAAGGGATGCAAATTATAGTTTCAGAAATTCTTTCGAAATGTAGTTTTGAAGTCTCAACACGTGATTAGAATATGACGAAACCCAAACCAAACTATACCATGAATGTAATAGATCAAGCCAAGTCTTCTAGGATTTTCAAAGTCTACTGGAACTACTTCAGGTCAATGACAAGAGACAGGTTGGCCCAAAGCAAAGGTGGAAGAGAGAAATCGTATGTAGAAATTGTGTCATTGAAGCAACTATTAATTACTTTGACGTCCATGTGGACTTGATAATTCCTAGATGTGGAGTAGGGATGTTAATTCAAATACAGTGTGCATTTCGTACTCTACTTGATGGGATAATTACAAGAATGAATTTGGGTTAAGTAGTACCTAAATGCAACTGTGGAGTAAACATTTATCCATGTGATTTTTATTTTTATTTTTTGTATCCTATGGGAATCTTCTTAGCTAAACAATAGAACATACATATAAAATAAATTAGCTTAGTTTCCTGTGTCTTGTATGATATTAAATTTCACATATTATAATTTATAAGAGTAATCTTTATATT
>Glyma.19g141200.1 sequence-type=CDS polypeptide=Glyma.19g141200.1.p locus=Glyma.19g141200 ID=Glyma.19g141200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGAGAAGCACCAGCATTGCTTGTTGATGACGTGCAGGATGGGGCTCTGAATGGCCTTGAATTGAAAAATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGTATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACGGTAGTCTTGGAGAATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGATTTTGTCACTGCTCCACCTATATCAGGCCCTATAGAGATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAA >Glyma.19g141200.2 sequence-type=CDS polypeptide=Glyma.19g141200.2.p locus=Glyma.19g141200 ID=Glyma.19g141200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAACTTGCAAAACAACTGCTACTGTTGGCGATAAGATGGGTTCGTCCCACTGTGCGTGGCACCAAACCCGTGTTGTGCAATGGCCTCTCAGCAGTGCCTTTGGAAGACCGAATACTGATTCTTAAGAAGGGTTCTAAGCCTGATGATCGGATATGGTTCCTGGAGATTGACACCCAATATGTTAGGCAGCAGCAAAAAATTTTGGGGACTGAGGTAGTTGCATGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACACTGATATCAATGCTTATGAAGGAATTTCCATCTATGTTTGGTTTTTCCGTGAGCCACACCACCCGTGCTCCAAGAGGTATCGAGAAAGATGGGGTTCATTACCATTTTACTGAGAAGAGTATAATGGAGAAAGAGATCAAAGAAGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGCAATCTGTATGGAACTAGTGTTGAGGCTGTCGAACTGGTAGCAGATGCAGGGAAAAGATGTATTCTTGATATTGACGTTCAAGGTGCAAGATCTGTGAGGGCTAGTACGCTTGAAGCTATATTCATCTTTATCTGCCCCCCATCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGGGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTACGAAATGCTGATGCTGAGATTGAGCAAGGGAAATCTTCTCAAATATTTGATTTCATCCTATACAATGACAATCTTGAGGAGTGTCATGAGAGACTTAAGAAACTATTGGGACTTGACGATTTTGTCACTGCTCCACCTATATCAGGCCCTATAGAGATTGATTTACCAATGGATCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGGTCATTTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACAAGAGGCCTAAATTTCCAAGCCATTGGCTCTTTCTCAAATGGCTTGAATGGGATAGATCAACTTAGCTAA
>Glyma.19g141200.1.p sequence-type=predicted peptide transcript=Glyma.19g141200.1 locus=Glyma.19g141200 ID=Glyma.19g141200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGEAPALLVDDVQDGALNGLELKNGTCKTTATVGDKMYVIGGADDGTLSIEVQIFDGSLGEWVRPTVRGTKPVLCNGLSAVPLEDRILILKKGSKPDDRIWFLEIDTQYVRQQQKILGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGIEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGARSVRASTLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNADAEIEQGKSSQIFDFILYNDNLEECHERLKKLLGLDDFVTAPPISGPIEIDLPMDHSVSKIDNKIIINCISSGEKESKNLVILDVSSLKGGAPGRTRGLNFQAIGSFSNGLNGIDQLS* >Glyma.19g141200.2.p sequence-type=predicted peptide transcript=Glyma.19g141200.2 locus=Glyma.19g141200 ID=Glyma.19g141200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELAKQLLLLAIRWVRPTVRGTKPVLCNGLSAVPLEDRILILKKGSKPDDRIWFLEIDTQYVRQQQKILGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGIEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGARSVRASTLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNADAEIEQGKSSQIFDFILYNDNLEECHERLKKLLGLDDFVTAPPISGPIEIDLPMDHSVSKIDNKIIINCISSGEKESKNLVILDVSSLKGGAPGRTRGLNFQAIGSFSNGLNGIDQLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
