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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13630.1 | AT | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0015995 | GO-bp | chlorophyll biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016851 | GO-mf | magnesium chelatase activity | EnsemblGenomes | N/A | IEA |
| GO:0016851 | GO-mf | magnesium chelatase activity | JGI | N/A | IEA |
| PTHR23304 | Panther | SPOT2-RELATED | JGI | N/A | IEA |
| PTHR23304:SF77 | Panther | JGI | N/A | IEA | |
| PF02514 | PFAM | CobN/Magnesium Chelatase | JGI | N/A | IEA |
| PF11965 | PFAM | Domain of unknown function (DUF3479) | JGI | N/A | IEA |
| CHLOROPHYLL-SYN | SoyCyc9 | 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | Plant Metabolic Network | ISS | |
| GN7V-47184 | SoyCyc9-rxn | magnesium chelatase | Plant Metabolic Network | ISS |
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Glyma.19g139300 not represented in the dataset |
Glyma.19g139300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g137000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g32070 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g139300.1 sequence-type=CDS polypeptide=Glyma.19g139300.1.p locus=Glyma.19g139300 ID=Glyma.19g139300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTTTGGTATCTTCACCATTTACTCTTCCAAGCTCTAAACCTGACCAGCTTCATTCTCTTGCCCAGAAGCATCTTTTTCTTCATTCTTTCCTTCCCAAGAAAGCCAATTACAATGGTAGCTCAAAATCCTCTCTGAGAGTGAAATGTGCTGTCATTGGCAATGGCCTATTCACCCAAACCACCCAAGAAGTTCGTAGAATAGTTCCAGAGAATGACCAAAACTTGCCAACAGTTAAAATTGTGTATGTGGTCCTTGAGGCTCAGTACCAATCATCCATCACTGCTGCAGTGATAGCTCTCAACAGCAAAAGGAAGCATGCTTCCTTTGAGGTTGTGGGTTACTTGGTTGAGGAGCTTCGTGACGCGGCGACGTACAAGACCTTCTGCAAGGACTTGGAGGATGCTAACATCTTCATTGGTTCCTTGATTTTTGTGGAGGAGCTCGCCCTCAAGATCAAGGCTGCAGTGGAGAAAGAAAGGGACAGGCTTGATGCAGTTTTGGTGTTCCCATCAATGCCTGAAGTGATGAGGCTCAACAAGTTGGGTTCTTTCAGCATGTCACAGCTTGGGCAGTCTAAGAGCCCCTTTTTCCAGCTGTTCAAGAGAAAGAAGCCTCAGTCTGCTGGCTTTGCTGATAGCATGTTGAAGCTTGTGAGGACATTGCCAAAGGTTTTGAAGTATTTGCCAAGTGATAAAGCTCAGGATGCCAGGCTCTACATACTGAGTCTGCAGTTTTGGCTTGGGGGGTCTCCTGATAACTTGCAGAATTTCCTGAAAATGATTTCTGGATCGTATATTCCGGCGCTGAAAGGGACGAAGATCGAGTATTCGGAGCCGGTTTTGTACTTGGATGTCGGGATTTGGCACCCTCTGGCTCCTTGTATGTATGATGATGTGAAGGAGTATTTGAATTGGTATGGAACCAGAAGGGATGCAAATGAGAAGCTGAAGAGTCCGAGTGCGCCTGTCATTGGTTTGGTTTTGCAGAGGAGTCACATTGTGACTGGTGATGATGGACACTATGTGGCTGTGATCATGGAGCTGGAGGCTAGAGGGGCTAAGGTCATTCCCATTTTTGCCGGTGGACTTGACTTTTCAGGGCCAGTGGAGAAGTTCTTCATCGATCCAATTACGAAAAAACCGTTTGTAAATTCTGTGGTTTCCCTCACTGGCTTTGCTCTTGTTGGAGGCCCTGCAAGGCAGGACCATCCAAGGGCGGTCGAGGCGTTGATGAAACTTGATGTTCCTTACATTGTTGCCTTGCCGTTGGTGTTTCAGACAACAGAAGAATGGCTCAACAGTACTCTTGGTCTGCATCCAATTCAGGTTGCTCTTCAAGTTGCTCTGCCAGAGCTAGATGGAGGCATGGAGCCTATTGTTTTCGCTGGTCGAGATCCCAAAACAGGAAAATCACATGCTCTTCATAAGAGAGTGGAACAGCTCTGCATCAGGGCAATCAGATGGGCTGAATTGAAAAGAAAATCAAAGGAAGAGAAGAAACTAGCAATTACTGTCTTCAGTTTCCCTCCAGACAAAGGAAACGTGGGAACTGCTGCCTATCTCAATGTCTTCGCCTCCATATACTCAGTTATGAAAGAACTAAAAAAAGATGGTTATAATGTTGACGGCCTTCCAGAGACTCCAGAAGCTTTGATTGAAGATGTAATTCATGACAAAGAAGCTCAATTCAGCAGCCCAAATCTGAATATTGCTTACAAAATGAGTGTCCGCGAGTACCAAAATTTGACTCCCTATGCCACAGCACTGGAGGAGAATTGGGGAAAACCCCCTGGCAATCTGAATGCAGATGGAGAGAATCTTTTGGTATATGGGAAACAGTATGGTAATGTCTTTATAGGTGTTCAGCCTACATTTGGCTATGAAGGGGATCCAATGAGGCTGCTTTTCTCCAAATCTGCCAGCCCTCATCATGGATTTGCAGCATATTATTCCTTTGTTGAGAAAATCTTCAAAGCTGATGCTGTACTTCATTTTGGGACACATGGTTCCCTTGAATTCATGCCTGGAAAACAGGTGGGGATGAGTGATGTCTGTTACCCTGACAGTCTGATTGGGAATATTCCAAATGTATATTACTATGCTGCAAACAACCCTTCTGAGGCCACCATCGCCAAGCGCAGGAGTTATGCAAACACCATTAGCTATCTGACTCCTCCAGCAGAAAATGCTGGGCTATACAAAGGTCTTAAGCAGTTAAGTGAGCTCATCTCCTCTTATCAGTCCCTCAAAGACACAGGCCGTGGGGCACAAATTGTGAGTTCAATTATCAGCACGGCTAAACAATGTAATCTTGACAAGGATGTGACACTCCCAAATGAGGGTGAGGAGATCCCTCTTAAAGAGCGTGACCTTGTGGTTGGAAAGGTGTATTCCAAGATCATGGAGATTGAGTCTCGTCTGTTACCTTGTGGGCTTCATGTCATTGGTGAGCCTCCCTCAGCCTTGGAAGCTGTTGCTACACTGGTCAACATTGCTGCTCTTGATCGTCCTGAAGATGGTATTTCTTCTCTTCCATCAATATTAGCTGACACTGTAGGAAGAGATATAGAAGATGTGTATAGAGGAAGTAACAAAGGAATATTGAAGGATGTGGAGCTTCTTAGGCAAATAACCGAGGCATCACGTGGAGCAATCACTGCCTTTGTGGAGCGTACTACCAATAATATGGGCCAAGTTGTTGATGTAGCTGATAAGCTTAGCTCAATCCTTGGATTTGGCATAAACGAGCCATGGATACAGTACTTGTCAAACACCAAATTTTACCGAGCTGATAGGGAAAAACTTAGAACCTTGTTTGTGTTCCTGGGAGAATGTTTGAAGTTGGTTGTGGCTGATAATGAAGTGGGAAGTTTAAAACAAGCCTTGGAAGGTAAATATGTGGAGCCAGGGCCTGGTGGTGACCCAATAAGAAATCCAAAAGTCTTGCCAACAGGAAAGAATATTCATGCCCTGGACCCACAAGCTATTCCTACAACTGCAGCGATGCAGAGTGCCAAAATAGTGGTAGATAGGTTGATTGAGAGGCAGAAAGCTGAGAATGGGGGAAAATATCCTGAGACAATTGCACTTGTATTGTGGGGTACTGATAATATTAAAACATATGGTGAATCCCTGGCTCAAGTGTTGTGGATGATTGGTGTGGAACCAGTGGCTGATACCTTTGGTAGGGTAAACCGGGTGGAACCTGTAAGTCTTGAAGAGCTTGGAAGGCCTAGGATTGATGTAGTTGTTAATTGCTCAGGAGTGTTTAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCTGAATTAGATGAACCAGCAGAGCAAAACTATGTAAGAAAGCATGCATTAGAACAAGCTCAAGCCCTTGGAGTTGAAGTTCGAGAGGCAGCAACAAGGATCTTCTCCAATGCTTCTGGCTCCTACTCCTCAAACATAAACCTGGCTGTGGAGAATTCTTCATGGAATGACGAGAAGCAGCTCCAGGACATGTATCTTAGCAGAAAGTCTTTTGCTTTTGATTCTGATGCTCCTGGTGCTGGCATGACTGAGAAAAGAAAAGTCTTTGAGATGGCTCTGAGCACAGCAGATGCCACATTCCAAAACCTTGATTCATCAGAAATTTCCCTCACTGATGTCAGTCATTACTTTGACTCAGACCCGACTAATCTGGTTCAAAATCTAAGGAAAGATGGCAAGAAGCCTAGTGCATACATTGCTGATACAACCACTGCCAATGCTCAGGTACGTACACTTTCTGAGACGGTTAGACTTGATGCTAGAACCAAGCTGTTGAATCCAAAGTGGTATGAAGGCATGTTGTCTACTGGATATGAGGGTGTACGCGAGATCGAGAAGAGACTCACCAATACAGTGGGATGGAGTGCAACTTCTGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACTTTCATTCAGGATGAGCAAATGCTGAACAAGCTCATGAACACTAATCCAAACTCCTTCAGGAAACTAGTGCAGACATTCTTGGAAGCCAATGGACGTGGTTATTGGGAAACTTCAGAAGATAATATTGAAAAGCTCAGGCAGTTGTATTCAGAAGTGGAAGACAAAATTGAAGGCATTGATCGCTGA
>Glyma.19g139300.1.p sequence-type=predicted peptide transcript=Glyma.19g139300.1 locus=Glyma.19g139300 ID=Glyma.19g139300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASLVSSPFTLPSSKPDQLHSLAQKHLFLHSFLPKKANYNGSSKSSLRVKCAVIGNGLFTQTTQEVRRIVPENDQNLPTVKIVYVVLEAQYQSSITAAVIALNSKRKHASFEVVGYLVEELRDAATYKTFCKDLEDANIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKPQSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYIPALKGTKIEYSEPVLYLDVGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSPSAPVIGLVLQRSHIVTGDDGHYVAVIMELEARGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVVSLTGFALVGGPARQDHPRAVEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCIRAIRWAELKRKSKEEKKLAITVFSFPPDKGNVGTAAYLNVFASIYSVMKELKKDGYNVDGLPETPEALIEDVIHDKEAQFSSPNLNIAYKMSVREYQNLTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGAQIVSSIISTAKQCNLDKDVTLPNEGEEIPLKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDGISSLPSILADTVGRDIEDVYRGSNKGILKDVELLRQITEASRGAITAFVERTTNNMGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADREKLRTLFVFLGECLKLVVADNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKIVVDRLIERQKAENGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVEPVADTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEQNYVRKHALEQAQALGVEVREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDSDAPGAGMTEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEQMLNKLMNTNPNSFRKLVQTFLEANGRGYWETSEDNIEKLRQLYSEVEDKIEGIDR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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