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Report for Sequence Feature Glyma.19g131600

Feature Type:gene_model
Chromosome:Gm19
Start:39215558
stop:39219450
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g131600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57090.1AT Tetratricopeptide repeat (TPR)-like superfamily protein JGI N/AIEA
GO:0000266GO-bp mitochondrial fission EnsemblGenomesN/AIEA
GO:0016559GO-bp peroxisome fission EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005741GO-cc mitochondrial outer membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG3364 KOG Membrane protein involved in organellar division JGI N/AIEA
PTHR13247Panther TETRATRICOPEPTIDE REPEAT PROTEIN 11 (TPR REPEAT PROTEIN 11) JGI N/AIEA

Expression Patterns of Glyma.19g131600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g131600
ParalogEvidenceComments
Glyma.03g129400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g131600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g31240 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g131600
>Glyma.19g131600.2 sequence-type=transcript locus=Glyma.19g131600 ID=Glyma.19g131600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTGTACAGGTCAAAAAATGCTGCATAATTCCAAAAACCCCAAACCTATAAATACTAAACTATTGAGTCACTGATTAATGCTTGTTATAAGTGATAACTGCTAATGGACGCCAAGTTCGGAAGCCTCTTCGAAACCATCGGAAACTTCTTCACCGGCGGTGAGCAGATCCCGTGGTGCGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGTGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTAGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTCGGTGGCATAGCTACGGCACTGGCCAGGAGGAGTTGAGAATCTTAAACGATTATTTCCTCAGAAATAATCTCAACCGAACAAGCTTAGTCTCTTTTTTGTTTTACTTTCTTCTGCAAATATGTTAAAGTCAATGGGAAATAATCCTCCGTTGACAACTACTGTTGTCAAGTTGTCAACATTTTTCTGTTTGTTAAAAGGAGCATTTTTACTGAAGAGATGATTTCAAATTTCCCTTTACAAATGCAATTTTTTTTTAAAAAAAAATTCTAGGTGG
Coding sequences of Glyma.19g131600
>Glyma.19g131600.1 sequence-type=CDS polypeptide=Glyma.19g131600.1.p locus=Glyma.19g131600 ID=Glyma.19g131600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCAAGTTCGGAAGCCTCTTCGAAACCATCGGAAACTTCTTCACCGGCGGTGAGCAGATCCCGTGGTGCGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGTGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTAGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGCATTAACTAAGGAATTGCAAATGTTCGTTGTATCAATGCCAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTCGGTGGCATAGCTACGGCACTGGCCAGGAGGAGTTGA

>Glyma.19g131600.2 sequence-type=CDS polypeptide=Glyma.19g131600.2.p locus=Glyma.19g131600 ID=Glyma.19g131600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCAAGTTCGGAAGCCTCTTCGAAACCATCGGAAACTTCTTCACCGGCGGTGAGCAGATCCCGTGGTGCGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGTGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTAGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTCGGTGGCATAGCTACGGCACTGGCCAGGAGGAGTTGA
Predicted protein sequences of Glyma.19g131600
>Glyma.19g131600.1.p sequence-type=predicted peptide transcript=Glyma.19g131600.1 locus=Glyma.19g131600 ID=Glyma.19g131600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAKFGSLFETIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWALVHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKALTKELQMFVVSMPDGVIGIGITATAVGLIVGGIATALARRS*

>Glyma.19g131600.2.p sequence-type=predicted peptide transcript=Glyma.19g131600.2 locus=Glyma.19g131600 ID=Glyma.19g131600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAKFGSLFETIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWALVHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKDGVIGIGITATAVGLIVGGIATALARRS*






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