Glyma.19g128600

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.19g128600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.19g128600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.19g128600

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38770543
stop:	38777643
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g128600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26800.1	AT	Aldolase superfamily protein	JGI	N/A	IEA
GO:0006457	GO-bp	protein folding	EnsemblGenomes	N/A	IEA
GO:0046951	GO-bp	ketone body biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004419	GO-mf	hydroxymethylglutaryl-CoA lyase activity	EnsemblGenomes	N/A	IEA
KOG2368	KOG	Hydroxymethylglutaryl-CoA lyase	JGI	N/A	IEA
PTHR10277	Panther	HOMOCITRATE SYNTHASE-RELATED	JGI	N/A	IEA
PTHR10277:SF1	Panther	PROTEIN Y71G12B.10	JGI	N/A	IEA
PF00682	PFAM	HMGL-like	JGI	N/A	IEA
LEU-DEG2-PWY	SoyCyc9	L-leucine degradation I	Plant Metabolic Network		ISS
GN7V-61095	SoyCyc9-rxn	hydroxymethylglutaryl-CoA lyase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.19g128600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g128600 not represented in the dataset	Glyma.19g128600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.19g128600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g30880	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g128600

Limit To All Plant Sequences

>Glyma.19g128600.2 sequence-type=transcript locus=Glyma.19g128600 ID=Glyma.19g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAGTCCAACTCAGCCTCCCACGTCTTTGTTCAGAACTATTCTCATTCATAACATCCATTTTCCTCACAGCTGCAAGCAAGTCTTTGATTTTCCATGGCTATGCATAGGATTCTTCAAAGGGGTCGTCGATTCTTCAATCCTCCACCGCAACTTGTTACTGCTTTCTCAGGTTCTGCTGCTTTTCACGCATTTCCCTCTCATGGGGTTGAATCTCCTCATGTTCGGGAAATTACAAACACAAGAGAAGTTAAGAATGACTTTGACAAATACCATGTAAAGGGTTTATCTCGATGCCTGAACTGGACTTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAACTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAAGTTACTATAGCTAGTCATGCACCTGCATGATAGGCACATTGTTTGGCCACTGTAGAATATGTATTTATGTTGGTGTTTACTGTCCCGTGGGCCCTGCCTATAGAAAAGAGAGAGCCAGCAAACACAATTGTAATGCTGTTCACTTCTGCTTGTGTTCTGAGTCAGTTTAGTCGCTTTGATTATTGAGAAAAATCACATGTTGAACATGTACTCCGGAACACACTTATAAAATTGCATAGAATGTCCAAGTTCAACAATTGTCATCTTTGACACATTTGCTATAATAAAGTAGTTGAAAAAATCACTATTTTTCATTTCTGGTTTGACCTTTTCCTTTCCTTCGCGAGTTTTTTGGATACA

>Glyma.19g128600.3 sequence-type=transcript locus=Glyma.19g128600 ID=Glyma.19g128600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAGTCCAACTCAGCCTCCCACGTCTTTGTTCAGAACTATTCTCATTCATAACATCCATTTTCCTCACAGCTGCAAGCAAGTCTTTGATTTTCCATGGCTATGCATAGGATTCTTCAAAGGGGTCGTCGATTCTTCAATCCTCCACCGCAACTTGTTACTGCTTTCTCAGGTTCTGCTGCTTTTCACGCATTTCCCTCTCATGGGGTTGAATCTCCTCATGTTCGGGAAATTACAAACACAAGAGAAGTTAAGAATGACTTTGACAAATACCATGTAAAGGGTTTATCTCGATGCCTGAACTGGACTTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGGTGCAGTTGATCTTAAGTATATCATTTTTCCTGTTTGTTATGTATTTTAACTTGAATATGTTGTTAAGCAAGGAAGATAATGCATGCTTAACTTAGTACATCATTATAGCTGTCATGTTGAGCCTATAATTTACATTTCATGAAAAGCCCAAGTCTATTATTTTTCATTTTGATTTCATACATTCAACACTAAAGAAAGTGCAGAAAGCAATAGCCGAACAAGTCTCAGGGCCGGGCCTGACTTCTAACAAGTGATTTATTCGGATTTCGGACAGAACAACATGCACCATGGAATGAATAAAAATTGAAAATAAACGAAGCATGCCAAGCGAAGATTCTAGAACCCCCTTGTATAAACAAAAATAGTATAAAATCAAAAAATTAAAATAGAACCAACATTAACCCTTTGTAAAACCCTAACAAGGGACCTCAAATTTCTCAACAAGAGGCTCTCTGTCAGTGTTCTCTCCCTTCCCTTTGGTGTCGTGTCTTCCAAATGGCGAAGCGTTTGATTCCACTGTTCAATCGGGTTTTGGTGGAGAAAATCGTGCCTCCATCGAAGATCACCACTGGCATTTTGTTACCCGAGAAATCCACCAAGCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAAGTTACTATAGCTAGTCATGCACCTGCATGATAGGCACATTGTTTGGCCACTGTAGAATATGTATTTATGTTGGTGTTTACTGTCCCGTGGGCCCTGCCTATAGAAAAGAGAGAGCCAGCAAACACAATTGTAATGCTGTTCACTTCTGCTTGTGTTCTGAGTCAGTTTAGTCGCTTTGATTATTGAGAAAAATCACATGTTGAACATGTACTCCGGAACACACTTATAAAATTGCATAGAATGTCCAAGTTCAACAATTGTCATCTTTGACACATTTGCTATAATAAAGTAGTTGAAAAAATCACTATTTTTCATTTCTGGTTTGACCTTTTCCTTTCCTTCGCGAGTTTTTTGGATACA

Coding sequences of Glyma.19g128600

Limit To All Plant Sequences

>Glyma.19g128600.1 sequence-type=CDS polypeptide=Glyma.19g128600.1.p locus=Glyma.19g128600 ID=Glyma.19g128600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTATGCATAGGATTCTTCAAAGGGGTCGTCGATTCTTCAATCCTCCACCGCAACTTGTTACTGCTTTCTCAGGTTCTGCTGCTTTTCACGCATTTCCCTCTCATGGGGTTGAATCTCCTCATGTTCGGGAAATTACAAACACAAGAGAAGTTAAGAATGACTTTGACAAATACCATGTAAAGGGTTTATCTCGATGCCTGAACTGGACTTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAA

>Glyma.19g128600.2 sequence-type=CDS polypeptide=Glyma.19g128600.2.p locus=Glyma.19g128600 ID=Glyma.19g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATATATGCTCAAAGGAGTTCTCAACTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAA

>Glyma.19g128600.3 sequence-type=CDS polypeptide=Glyma.19g128600.3.p locus=Glyma.19g128600 ID=Glyma.19g128600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAGCGTTTGATTCCACTGTTCAATCGGGTTTTGGTGGAGAAAATCGTGCCTCCATCGAAGATCACCACTGGCATTTTGTTACCCGAGAAATCCACCAAGCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAA

Predicted protein sequences of Glyma.19g128600

Limit To All Plant Sequences

>Glyma.19g128600.1.p sequence-type=predicted peptide transcript=Glyma.19g128600.1 locus=Glyma.19g128600 ID=Glyma.19g128600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMHRILQRGRRFFNPPPQLVTAFSGSAAFHAFPSHGVESPHVREITNTREVKNDFDKYHVKGLSRCLNWTSRSNANSQASCYVVNRHFASDCNDICSKEFSSKLLTSIPDYVKIVEVGARDGLQNEKAIIPTNVKVELIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNSSIEDNLARCHDIASAARSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVISMLEAVLDVVPTDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATALSKVTSHASKL*

>Glyma.19g128600.2.p sequence-type=predicted peptide transcript=Glyma.19g128600.2 locus=Glyma.19g128600 ID=Glyma.19g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIYAQRSSQLLTSIPDYVKIVEVGARDGLQNEKAIIPTNVKVELIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNSSIEDNLARCHDIASAARSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVISMLEAVLDVVPTDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATALSKVTSHASKL*

>Glyma.19g128600.3.p sequence-type=predicted peptide transcript=Glyma.19g128600.3 locus=Glyma.19g128600 ID=Glyma.19g128600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKRLIPLFNRVLVEKIVPPSKITTGILLPEKSTKLLTSIPDYVKIVEVGARDGLQNEKAIIPTNVKVELIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNSSIEDNLARCHDIASAARSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVISMLEAVLDVVPTDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATALSKVTSHASKL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain