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Report for Sequence Feature Glyma.19g125800

Feature Type:gene_model
Chromosome:Gm19
Start:38410642
stop:38423531
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g125800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40840.1AT disproportionating enzyme 2 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0005977GO-bp glycogen metabolic process EnsemblGenomesN/AIEA
GO:0004134GO-mf 4-alpha-glucanotransferase activity EnsemblGenomesN/AIEA
GO:0004134GO-mf 4-alpha-glucanotransferase activity JGI N/AIEA
GO:0030246GO-mf carbohydrate binding EnsemblGenomesN/AIEA
GO:2001070GO-mf starch binding EnsemblGenomesN/AIEA
GO:2001070GO-mf starch binding JGI N/AIEA
PF00686PFAM Starch binding domain JGI N/AIEA
PF02446PFAM 4-alpha-glucanotransferase JGI N/AIEA
PWY-7238SoyCyc9 sucrose biosynthesis II Plant Metabolic Network ISS
GN7V-53004SoyCyc9-rxn 4-α-glucanotransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g125800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g125800
ParalogEvidenceComments
Glyma.03g121100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g125800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g30580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g125800
>Glyma.19g125800.1 sequence-type=CDS polypeptide=Glyma.19g125800.1.p locus=Glyma.19g125800 ID=Glyma.19g125800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAATCCGGGATTGTTTTCTGCGAATAAGTCTACGAATTCGGTGAAAGTAAGCTTTCGGATACCGTATTTCACCCAATGGGGTCAGAGCTTGCTGGTGTGTGGCTCTGTACCAGTTCTTGGTTCCTGGAATGTGAAGAAGGGTGTGTTGCTCAGCCCCGTTCATCAAGGGGCTGAGCTCATATGGGGTGGAAGTATCACTGTGCCAAAAGGGTTCCAATGCCAGTACAGCTATTATGTTGTAGATGATAACAAAAATGTACTGAGATGGGAGATGGGGAAGAAGCGTGAACTGGTACTCCGTGAAGGGATTCAGAGTGGCCAGGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGATGCACTTCCTTTCAGAAGTGCTTTCAAAGATGTCATTTTTCGGCAAAGCTGGGACTTGAGCGATGCAACCGTAGGAGTAAACCACATTAATGTTGAACCGGAAGGAGAAGCTATCTTGGTCCAATTCAAAATTTCCTGCCCAAATATTGAGAAAGACACATCAATATATGTCATTGGCAGCAATACAAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCAATCAAATATAGATATGGAAAATATGACAGGAGTGGGAACTTTTCTATAGAGAGTGGTCCAAATCGAGAAGTCTATGCTAACTCCCCAAGGAATGAGGCGAAATATATTTTTCTTTCAGATGGCATGATGCGGGAAATACCTTGGCGTGGTGCTGGTGTAGCAGTCCCCATGTTTTCTGTTAGGTCAGAATCTGATCTGGGTGTTGGGGAGTTTCTTGACCTTAAGTTGCTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTCTTTGCATTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTAAGAACATACCCGAGGAGATCAAGAAAGAGATTGAAAAGGCAAAACAGCAATTGGATGGGAAGGATGTTGATTATGAGGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTCGCTCAAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTAAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCTTATGCTGCTTTCTGTTTCCTGCGGGACTTCTTTGAAACATCAGATCGCACTCAATGGGGTTGTTTTGCTCATTACTCAGAGGATAAGCTAGAGAAACTTGTATCCAAGGACAGCCTGCATTATGAGATAATTTGCTTCCACTACTATGTTCAATACCATTTACATTTACAATTATCAGAAGCTGCAGAATATGCAAGAAAGAAGGGAGTGATACTAAAGGGAGATCTTCCTATTGGAGTTGACAGAAACAGTGTGGATACCTGGGTTTATCCAAATTTGTTTCGAATGAACACTTCTACTGGGGCACCTCCAGATTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTGACACAGATGGCAAAATATTTTACAGCTTACAGGATTGATCACATTTTGGGATTCTTCCGAATTTGGGAACTTCCGGATCATGCTGCGACAGGTCTTGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCAGGAAGAACTTGAACGAGAAGGAATATGGGACTTTAATCGCCTAAGTTACCCATATATTAAGCGGGAACTATTACAGGAAAAATTTGGTGATGCTTGGACTTTTGTTGCAACAACTTTTCTAAAGGAAATTGACAAGAACTTCTATGAGTTCAAGGAGGATTGCAACACAGAGAAAAAAATTGCTTCCAAACTGAAAACTTGTGCAGAAAGTTCTCTCTTGTTGGAGAGTGTAGACAAATTGCAGCGTAATCTCTTTGATCTTTCACAGAATATAGTTCTAATCCGAGATCCAGAGGATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCATAAGTTTCCAGGATTTGGATGATCATAGCAAGAATGTTCTCAAACGATTATACCATGACTACTATTTCTGTCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTGGCCTGTGGGGAAGATTTGGGTCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCCAATGAACCTGATCTGGAATTTGGTATTCCTTCTAAGTACAGCTACATGACGGTATGTGCCCCTTCATGTCATGACTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGAAGACTCCGGTTTTTCAAGAATGTGATGGAGTCCGATGGGTTGCCGCCCGATCAATGTGTTCCAGAAGTTGCACATTTTGTTATAAGGCAGCATTTTGAAGCCCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGCTAGCATTAAAAGAAGAATATACAACACGCCCTGCAACAGAGGAGACAATCAATGACCCTACGAATCCGAAGCACTATTGGAGATTCCGTGTGCATGTGACTTTGGAATCATTGATCAAGGATAATGACCTCCAAACCACCATCAAAGATCTCGTCAGTTGGAGTGGAAGATCACTCCCTAAGGAAGACGACTCAGAAATAGAAGCGAGCCCAGTGTCGGTGTTGTCAGCAGCAGAAGCTCTTTCTGAGAAGCAGAAGTTTGCCAGTACCACGGAAAAGCCTGTTCTTGTCAAATAA
Predicted protein sequences of Glyma.19g125800
>Glyma.19g125800.1.p sequence-type=predicted peptide transcript=Glyma.19g125800.1 locus=Glyma.19g125800 ID=Glyma.19g125800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVNPGLFSANKSTNSVKVSFRIPYFTQWGQSLLVCGSVPVLGSWNVKKGVLLSPVHQGAELIWGGSITVPKGFQCQYSYYVVDDNKNVLRWEMGKKRELVLREGIQSGQEIEFRDLWQTGSDALPFRSAFKDVIFRQSWDLSDATVGVNHINVEPEGEAILVQFKISCPNIEKDTSIYVIGSNTKLGQWKVENGLKLSYFGESVWKAECVMQRSDFPIKYRYGKYDRSGNFSIESGPNREVYANSPRNEAKYIFLSDGMMREIPWRGAGVAVPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSKNIPEEIKKEIEKAKQQLDGKDVDYEATMATKLSIAKKVFAQEKDLILNSSSFKEFFSENEGWLKPYAAFCFLRDFFETSDRTQWGCFAHYSEDKLEKLVSKDSLHYEIICFHYYVQYHLHLQLSEAAEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAATGLVGKFRPSIPLSQEELEREGIWDFNRLSYPYIKRELLQEKFGDAWTFVATTFLKEIDKNFYEFKEDCNTEKKIASKLKTCAESSLLLESVDKLQRNLFDLSQNIVLIRDPEDPRKFYPRFNLEDTISFQDLDDHSKNVLKRLYHDYYFCRQENLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPDLEFGIPSKYSYMTVCAPSCHDCSTLRAWWEEDEERRLRFFKNVMESDGLPPDQCVPEVAHFVIRQHFEAPSMWAIFPLQDLLALKEEYTTRPATEETINDPTNPKHYWRFRVHVTLESLIKDNDLQTTIKDLVSWSGRSLPKEDDSEIEASPVSVLSAAEALSEKQKFASTTEKPVLVK*






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