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Report for Sequence Feature Glyma.19g124800

Feature Type:gene_model
Chromosome:Gm19
Start:38294743
stop:38299432
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g124800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68070.1AT Zinc finger, C3HC4 type (RING finger) family protein JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI N/AIEA
PTHR11203Panther CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR JGI N/AIEA
PTHR11203:SF27Panther JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.19g124800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g124800
ParalogEvidenceComments
Glyma.03g120200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g124800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g30480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g124800
>Glyma.19g124800.1 sequence-type=CDS polypeptide=Glyma.19g124800.1.p locus=Glyma.19g124800 ID=Glyma.19g124800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCAACAGCAGCGCCACGTCAGCAGCGGAACTACTAATCCTGTGGCCGTGCTCCGCTTCTCCACGGGGCGCGCCTTCCCCTTCGCACGCCTCATCGCCGCCTCCCGCCGCCGCCTATTCCTCTCCGACTGCGCCGACCACCGATCGGACGACGACGGAGACAGCGACGCCGACGCCGGCGAGTGCGCGTACTCGCGCGCGGTGCTGGTGCTCGACATGGTGTGGAACCTCGCCTTCGTCGTCGCCGCCGCCGGCGTCCTCCTCTCCACGCTCCGAGAGCGGCCAGCGACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCGTTCGTGTACTTCGAATTCCGAACCAGAATTCGCGATTCCTTCTCTCACACTACCTATAGCATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGAAGATTCTCCACATCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCATTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATAGGTTTAGCCTGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTGTTAAAGTAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGTCTGTGTCCATATGTTGAAGGAGAAGAACTGTATCGCCTTCCCTGTACACACCATTTTCATTGTGGATGCATCAGCCGTTGGCTTCGGACAAAAGCTACTTGCCCGCTGTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA
Predicted protein sequences of Glyma.19g124800
>Glyma.19g124800.1.p sequence-type=predicted peptide transcript=Glyma.19g124800.1 locus=Glyma.19g124800 ID=Glyma.19g124800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDQQQRHVSSGTTNPVAVLRFSTGRAFPFARLIAASRRRLFLSDCADHRSDDDGDSDADAGECAYSRAVLVLDMVWNLAFVVAAAGVLLSTLRERPATPLRLWLCGYAFECVLHMAFVYFEFRTRIRDSFSHTTYSIVKKLEPMNTLASSVWWVFGFYWIVVGGQALLEDSPHLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDIRSLPMYRFSLSNSLVMVDDNKKQLVKVRVDSCNGSHMSELSLHPDDSECCICLCPYVEGEELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLV*






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