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Report for Sequence Feature Glyma.19g123900

Feature Type:gene_model
Chromosome:Gm19
Start:38172559
stop:38179549
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g123900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56930.1AT DHHC-type zinc finger family protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0019706GO-mf protein-cysteine S-palmitoyltransferase activity EnsemblGenomesN/AIEA
KOG1311 KOG DHHC-type Zn-finger proteins JGI N/AIEA
PTHR22883Panther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN JGI N/AIEA
PF01529PFAM DHHC palmitoyltransferase JGI N/AIEA

Expression Patterns of Glyma.19g123900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g123900
ParalogEvidenceComments
Glyma.03g119700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g123900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g30360 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g123900
>Glyma.19g123900.1 sequence-type=CDS polypeptide=Glyma.19g123900.1.p locus=Glyma.19g123900 ID=Glyma.19g123900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGGGAATAAAATTCCGCAAATGGGGGGTTCTCCTTCTGGCAATTCGGTTCACAAACAAAGAAGGCTTTATCAAGTTTGGAGGGGAGGCAACAAGTTTTTCTGTGGTGGGAGGCTGGTTTTTGGTCCGGATGTAGCTTCCCTGTTTCTTACAACATTCCTAATTGCTGGACCTGCAATTGCATTTTGTGTAAAGATATATCTTAAAATCAAGAAGACCGATGGTCTTATTCATGATTACTGGTTTCCTGTATTGATTGTGGGTTCAATTCTCACTGTTTTGGATTTAATATTCCTCCTTTTGACTTCTGGGAGAGATCCTGGAATTGTCCCCAGAAATTCAAGACCTCCTGAATTTGATGAAACATGTGATATACCTACCCCTTCCATGGAGTGGATTAATGGCACAACCCCTCATCTGAAACTACCTCGAACTAAAGATGTTGTTGTTAATGGTCACATAGTGAAAGTAAAGTTCTGTGATACGTGCTTGCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATACGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGCATATATGTCTTCGCGTTCTCTTGTATCAATATTGCCCACAGTGGCATTTGGAAGACAATAACACATGATTATGTATCAGATTTTCTGATAATATACTGCTTCATAGCTGTCTGGTTTGTTGGTGGCCTCACAGCTTTCCATTTCTATCTCATTTGTACAAATCAGACAACTTATGAGAACTTCCGATATCAATATGATAAGAAGGGGAACCCATTCAATAGGGGATCATGCAGAAATCTTAAAGAAACACTTTGTTCCAGTATTCCCCATTCGAAGAATAATTTCCGATCATTTGTTGTGGAGGATGAACTTATGATGGTCGGGTCTCTGACTCCAAATATTGGGGATGGAATTTTGACCCCAAAGGAGAAAATTGATATTGAAATGGGATCTATGCGTGCAGAAGATGGACGTATGCCTGTTCCTGAACTTCTGCGAAATTTTGATTTTGATAATTTTGATGGTGACATGAAGTTTGCAGATGACGACGGGCAGCCTTCTTTTGATCCATTCTACAGTATTGAAGATGATGCAAAAGATTCAGCCCGAACATCCATTCAAACAGTTCTGAATTTCCAAAGCATAACTGAAGATGTAATGGAAGAGTCTGTGCAAAGCTCCCATGCTGGAGGAAACGTCAGAGAATCTACCCAAAAGCACTTTACTGGTGATGGAACATATACAATCAAGGAAACCGATGACAGGAATCACTCACATTAA
Predicted protein sequences of Glyma.19g123900
>Glyma.19g123900.1.p sequence-type=predicted peptide transcript=Glyma.19g123900.1 locus=Glyma.19g123900 ID=Glyma.19g123900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGNKIPQMGGSPSGNSVHKQRRLYQVWRGGNKFFCGGRLVFGPDVASLFLTTFLIAGPAIAFCVKIYLKIKKTDGLIHDYWFPVLIVGSILTVLDLIFLLLTSGRDPGIVPRNSRPPEFDETCDIPTPSMEWINGTTPHLKLPRTKDVVVNGHIVKVKFCDTCLLYRPPRTSHCSICNNCVQRFDHHCPWVGQCIGIRNYRYFFMFISTSTSLCIYVFAFSCINIAHSGIWKTITHDYVSDFLIIYCFIAVWFVGGLTAFHFYLICTNQTTYENFRYQYDKKGNPFNRGSCRNLKETLCSSIPHSKNNFRSFVVEDELMMVGSLTPNIGDGILTPKEKIDIEMGSMRAEDGRMPVPELLRNFDFDNFDGDMKFADDDGQPSFDPFYSIEDDAKDSARTSIQTVLNFQSITEDVMEESVQSSHAGGNVRESTQKHFTGDGTYTIKETDDRNHSH*






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