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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56940.1 | AT | dicarboxylate diiron protein, putative (Crd1) | JGI | N/A | IEA |
| GO:0015979 | GO-bp | photosynthesis | EnsemblGenomes | N/A | IEA |
| GO:0015995 | GO-bp | chlorophyll biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| GO:0048529 | GO-mf | magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | EnsemblGenomes | N/A | IEA |
| PF02915 | PFAM | Rubrerythrin | JGI | N/A | IEA |
| CHLOROPHYLL-SYN | SoyCyc9 | 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) | Plant Metabolic Network | ISS | |
| GN7V-47932 | SoyCyc9-rxn | Mg-protoporphyrin monomethyl ester 13-hydroxylase | Plant Metabolic Network | ISS |
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Glyma.19g123800 not represented in the dataset |
Glyma.19g123800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g119500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g30350 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g123800.1 sequence-type=CDS polypeptide=Glyma.19g123800.1.p locus=Glyma.19g123800 ID=Glyma.19g123800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTCCTCCTTAGTCCTCAACCACCCTTCTTCACTTCCCTTCACATTGCAGAAGAGATGGCTCTTGTGAAACCAATTTCCAATGTCACTCCCAAATTTGGCAGCAGCCCCAGAATGGGATCACACTCCAAATTCAGCACCATAATAAGAATGTCTGCCACTGCCACCCCACCACCACCACCCTCCACCTCCACAAAGCCAGCTGCAAGCAACAAGAAGGGCAACATCAAGGAGACCCTCTTGACTCCAAGGTTCTACACCACTGACTTTGATGAGATGGAGACCCTCTTCAACACTGAGATCAACAAGAACCTCAACCAGGATGAGTTTGAGGCACTGCTCCAGGAGTTCAAGACTGACTACAACCAGACACACTTTGTGAGGAACAAGGAGTTCAAGGAAGCTGCTGACAAACTTGAGGGGCCACTCAGGCAGATCTTTGTGGAGTTCCTTGAGAGGTCCTGCACTGCTGAATTCTCTGGCTTCCTTCTCTACAAAGAGCTTGGAAGGAGGCTCAAGAAAACCAACCCCGTGGTGGCAGAGATTTTCTCTCTGATGTCTAGGGATGAAGCCAGGCATGCTGGGTTTTTGAACAAAGGTTTATCTGATTTTAATTTGGCTCTGGACTTGGGTTTCTTGACCAAAGCTAGAAAATACACATTTTTCAAGCCCAAGTTTATCTTCTATGCTACATACTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAGGCCAACCCCGAGTTCCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAGGATGAGAACAGGCATGGAGATTTCTTCTCTGCCCTGATGAAGGCACAGCCACAATTTCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGTCTATCGGTTTATGTTACAATGTATCTCAATGATTGCCAACGTACAGCTTTCTATGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACCCAGAGTTCAAGCGGAAGTTGGACCGGATGGTGGAGATAAACGAGAAGATTATTGCTGTTGGGGAGAGTGATGACATAGCGGTGGTGAAGAACTTGAAGAGGATCCCACTGGTTGCTGCATTGGTGTCTGAACTCTTGGCAACATATCTAATGCCTCCAATTGAGTCAGGGTCTGTAGATTTGGCAGAGTTTGAACCACAACTTGTGTACTGA
>Glyma.19g123800.1.p sequence-type=predicted peptide transcript=Glyma.19g123800.1 locus=Glyma.19g123800 ID=Glyma.19g123800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLLLSPQPPFFTSLHIAEEMALVKPISNVTPKFGSSPRMGSHSKFSTIIRMSATATPPPPPSTSTKPAASNKKGNIKETLLTPRFYTTDFDEMETLFNTEINKNLNQDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLEGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINEKIIAVGESDDIAVVKNLKRIPLVAALVSELLATYLMPPIESGSVDLAEFEPQLVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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