SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g123100

Feature Type:gene_model
Chromosome:Gm19
Start:38121571
stop:38126012
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g123100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56490.1AT HIS triad family protein 3 JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
KOG3275 KOG Zinc-binding protein of the histidine triad (HIT) family JGI N/AIEA
PTHR23089Panther HISTIDINE TRIAD (HIT) PROTEIN JGI N/AIEA
PF01230PFAM HIT domain JGI N/AIEA
GN7V-45291SoyCyc9-rxn adenylylsulfatase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g123100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g123100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g30260 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g123100
>Glyma.19g123100.2 sequence-type=transcript locus=Glyma.19g123100 ID=Glyma.19g123100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATATGTAAGTAAAAGTGTGTTTTGTTATCATTTCTCAGTAACAGCGACATAAATCCAGAAACAAAAAGCATTGTTTTGGTAACTTGGTAATATATTTTGTTGCACTCTATGGCCTCAGAGACAGAAGCTGCTCTTGCTGCCACTCCCTCTGATGGTCCCACCGTATTTGACAAGATCATCAATAAGGAAATTCCTTCTACTGTGGTCTATGAGGATGATAAGGTCCTTGCCTTTAGGGACATAGATCCACAAGCTCCTACCCATATTCTAATCATTCCTAAAGTTAGGGATGGGTTAACTGGTCTGTCCAAGGCTGAGGAGAGGCACTGTGAGATTCTAGGTCGACTTTTGTGCACTGCTAAGCTGGTTGCAAAGCAAGAAGGTCTTGATGATGGCTTCAGGATTGTAATTAATGATGGACGAGACGGGGGCCAATCAGTTTACCACATTCATGTGCACCTCATTGGGGGACGACAGATGGGCTGGCCCCCTTTCTAAAATGTGAAAAGATTCGTAGTGTCACGGTATGCCTTTGTGCAGACCTGCAGTTATACTCTGCTTATGCAATCTATAAATAATGGTTTTAATTTTTAAATGACTAAGTAGTGTCTTGATGTTACACCAAGAAATTATGATGTTGTGTTAGATGGCCTATACTAATTATGTTTAAACTAGTGTGTCAAATTTATGCTAAAACCATATTCCAAAGTCGTTTATGGATTATGGTTGTTGATGGCGTTTCAGTGTTTCCTATGCTATGTTATAATTCCTGCACCAACATTAGCAGAATCATGTTTGTGGATAATGAGATACTGCTGGGCACATTTTTTTGCATGTGTGGTTTTGTTTTGTTTTTGAATTGAATTGAGAGGTGTGGGGGTGAGTTTGAGTTTATTACTGGT
Coding sequences of Glyma.19g123100
>Glyma.19g123100.1 sequence-type=CDS polypeptide=Glyma.19g123100.1.p locus=Glyma.19g123100 ID=Glyma.19g123100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTTAGGCTTAGAGGGTAGTAAAATTTTATTAGCTTGCTTTCGGCATAGTGGAAATGCGATATCACATGGCCACAGAAATCGGCGAGTTTCTTTGTGGGTATCATTTGCTGGTGATTCTGTGAAGATATATGCCCGATTTGACAAGATCATCAATAAGGAAATTCCTTCTACTGTGGTCTATGAGGATGATAAGGTCCTTGCCTTTAGGGACATAGATCCACAAGCTCCTACCCATATTCTAATCATTCCTAAAGTTAGGGATGGGTTAACTGGTCTGTCCAAGGCTGAGGAGAGGCACTGTGAGATTCTAGGTCGACTTTTGTGCACTGCTAAGCTGGTTGCAAAGCAAGAAGGTCTTGATGATGGCTTCAGGATTGTAATTAATGATGGACGAGACGGGGGCCAATCAGTTTACCACATTCATGTGCACCTCATTGGGGGACGACAGATGGGCTGGCCCCCTTTCTAA

>Glyma.19g123100.2 sequence-type=CDS polypeptide=Glyma.19g123100.2.p locus=Glyma.19g123100 ID=Glyma.19g123100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCAGAGACAGAAGCTGCTCTTGCTGCCACTCCCTCTGATGGTCCCACCGTATTTGACAAGATCATCAATAAGGAAATTCCTTCTACTGTGGTCTATGAGGATGATAAGGTCCTTGCCTTTAGGGACATAGATCCACAAGCTCCTACCCATATTCTAATCATTCCTAAAGTTAGGGATGGGTTAACTGGTCTGTCCAAGGCTGAGGAGAGGCACTGTGAGATTCTAGGTCGACTTTTGTGCACTGCTAAGCTGGTTGCAAAGCAAGAAGGTCTTGATGATGGCTTCAGGATTGTAATTAATGATGGACGAGACGGGGGCCAATCAGTTTACCACATTCATGTGCACCTCATTGGGGGACGACAGATGGGCTGGCCCCCTTTCTAA
Predicted protein sequences of Glyma.19g123100
>Glyma.19g123100.1.p sequence-type=predicted peptide transcript=Glyma.19g123100.1 locus=Glyma.19g123100 ID=Glyma.19g123100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLGLEGSKILLACFRHSGNAISHGHRNRRVSLWVSFAGDSVKIYARFDKIINKEIPSTVVYEDDKVLAFRDIDPQAPTHILIIPKVRDGLTGLSKAEERHCEILGRLLCTAKLVAKQEGLDDGFRIVINDGRDGGQSVYHIHVHLIGGRQMGWPPF*

>Glyma.19g123100.2.p sequence-type=predicted peptide transcript=Glyma.19g123100.2 locus=Glyma.19g123100 ID=Glyma.19g123100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASETEAALAATPSDGPTVFDKIINKEIPSTVVYEDDKVLAFRDIDPQAPTHILIIPKVRDGLTGLSKAEERHCEILGRLLCTAKLVAKQEGLDDGFRIVINDGRDGGQSVYHIHVHLIGGRQMGWPPF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo