|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G24380.1 | AT | JGI | N/A | IEA | |
KOG2551 | KOG | Phospholipase/carboxyhydrolase | JGI | N/A | IEA |
PTHR22778 | Panther | OVARIAN CANCER GENE-2 PROTEIN-RELATED | JGI | N/A | IEA |
PF03959 | PFAM | Serine hydrolase (FSH1) | JGI | N/A | IEA |
PWY-3841 | SoyCyc9 | folate transformations II | Plant Metabolic Network | ISS | |
PWY-6614 | SoyCyc9 | tetrahydrofolate biosynthesis | Plant Metabolic Network | ISS | |
GN7V-67142 | SoyCyc9-rxn | dihydrofolate reductase | Plant Metabolic Network | ISS |
Glyma.19g121600 not represented in the dataset |
Glyma.19g121600 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.03g004300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma19g30110 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g121600.1 sequence-type=CDS polypeptide=Glyma.19g121600.1.p locus=Glyma.19g121600 ID=Glyma.19g121600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGGAGAAAATGGAAAGAAGCTGAAAATACTGTGCCTCCACGGATTCAGAACAAGTGGGAGTTTTCTTAAAAAGCAAATCAGCAAATGGGATCCTTCTCTATTCATTCAATTTGATATGGTTTTCCCAGATGGTAAATACCCTGCTGGAGGGAAGTCTGACATAGAAGGCATCTTCCCTCCACCTTACTATGAGTGGTTTCAATTCGAAAAGGACTTCACAGTGTACTTTAACTTGGAAGAATGCATCTCATACTTATGCGATTATATTACAGCCAATGGTCCCTTTGATGGCTTCCTTGGCTTCTCACAGGGTGCAACTCTTTCAGCACTTTTGATAGGTTACCAGGCACAGGGAAAGGTGCTAAAGGAGCATCCACCCATAAAATTTTTCATATCAATATCAGGAAGCAAATTTAGAGATCCCAGCATATGCGATGTTGCCTACAAAGACCCCATCAAAGCTAAATCTGTTCACTTCATTGGGGAAAAAGATTGGCTGAAACTGCCTTCAGAGGATCTAGCGTCTGCATTTGACAAACCCTTCATAATAAGGCATCCCCAAGGTCACACCGTCCCACGATTAGATGAAGTGGCTATCAGTCAATTGAGAAAATGGATTACAGAAGAAGTCCTTTGTCAACCAAAAGTTGAGGTCTCAGTTTGTGAGCGTGAAACAGACCATGAAGAAAAGATGTCAGAGAAGACGACCAAGATAGAACCATGCGGTACCAATCAAGACAAAGGTGTAAACGGTGTAGAAATAAACAAGGGTTCTGAAACAGTAGAGGTGGCTCAAGCCTGA
>Glyma.19g121600.1.p sequence-type=predicted peptide transcript=Glyma.19g121600.1 locus=Glyma.19g121600 ID=Glyma.19g121600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEGENGKKLKILCLHGFRTSGSFLKKQISKWDPSLFIQFDMVFPDGKYPAGGKSDIEGIFPPPYYEWFQFEKDFTVYFNLEECISYLCDYITANGPFDGFLGFSQGATLSALLIGYQAQGKVLKEHPPIKFFISISGSKFRDPSICDVAYKDPIKAKSVHFIGEKDWLKLPSEDLASAFDKPFIIRHPQGHTVPRLDEVAISQLRKWITEEVLCQPKVEVSVCERETDHEEKMSEKTTKIEPCGTNQDKGVNGVEINKGSETVEVAQA*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||